AMCG00014687


Basic Information

Item Value
gene id AMCG00014687
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26904877 ~ 26911237 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014687
ATGAACGGACATTTACAATGTGCCTTCTGTAGCTACCAGTGTGTTAGCAATGAGACCTTCCAGATTCATATGGGTACGTACCATCCTGTTCACTGTGACGAAATTGACGTAGGCAGGTTGGGCAAGGTCATCATTTACCAGAGAAGTGCCAAACTCTACCACTGCAAGATGTGTTTCTTCACCGGGAAAACCTACGCCCGAGTGTACGACCACGTCATCGTCAGCCACTCTTTCTCAGGACACAAGAACATCCAGGCGTTCAAAATCAAGACCAGCGAGAATGGAGAGTTGAAGGAGCACCTGAGTGATGACAACGAGGACAAGGAGGTCTCCGTCAAAGAACCACCGAAGGCCCAAATTGGGGACGGCAAGGGAGAGCATCCGAACACAAAACCCGGTGCGACCAACCAGGATTACCTCAACAAAATGCCGGCCAAGTTCACGCCTCTGAACAGCACCAAGAACGAGGACGAAGGGTCGGACGAGGACGAAGACTCCCTTGGTGTTGGAGCGGTGACAACGTCgctgaagaggaagagaaacagcGATGAAGAGCAGCCGCCGGACGATGAGGACTTCCCTGACTACTCTCCTGGCGGGGCGTCGAACGCATCCAGCAAGCAGCTCGAGCAGGAGGAGTCAAAGGATAATGCCCAGGCTGAGGAGGAGTTCCTGTCCAAGTATGTTCGGCGCAACGTGGGTAGATACTATTGCAAGATCTGCAACTGGAGGGGCAAGATGAAAGGATTTGTCCTCTACCACGTCAGCAGGAAACACAACATCCCCAAGCCCTACGCCTGCAAGGAATGCCACAAGTCCTTCTTCCTGGAGAGCCTGCTCAACAACCACATCAGTCTGCACCACAAGCAAGGTCTGTACAAGTGCCCCTATTGTCCCTTCGAGTCCAACTTCCTGCGAGGTATCAGGAAGCACCTGAAACACTGCAGCTCGCAGCAGGGTGAAGCTCGGGACAACGAGCCCTGGGACAGTGACGAGCACATGGATGAGCAGGAATAA
>TU89946
GTACCTTACACAGACCCTGATTGGCTGACGCCAAACCGCGGCGGAGAGGGGACGTTGCAAGCTGTCTatgctattcttttttttacatgtcAATTACTTaaaactgtgtatttaaataaaatatacaacataatGCATATCAGTCggtaaaacaaacactgagaAGCATGAGTCTAGATTAATCTGCATTGAATGTTGGGGAAGCTGAAATTAAGGATCAGGTCTTCTCTCCCTGTGACAGGAGAGCCTGCATGGCACAAAAGGTAAAGTCCATGGAAGCACACAGACAAATGTTCAACGCAGGAATGAACGGACATTTACAATGTGCCTTCTGTAGCTACCAGTGTGTTAGCAATGAGACCTTCCAGATTCATATGGGAATCAAAGTGGATCGGAAGACTTATCCTGTTTTCTATAACACTAATCCGTCTCAGAGTGCAAGGCGGCCTGCGGACTGGAGGCTATTCAATTACAGGTGATCACTCTCGGCTGGTATGATTCACTCTTCTCAGCCGAGCTGGGCAACCAAAGTGAAGCAGATCCACTGGGGACTTGAGCCTCCAACCCTCTGGTAATGAGTAATAGCATCCGAGTCAGTGCTGCACTCTGCCCTTCATTTCATATGCATACGGACATTGCTTTACTCTGTGATTATCCCATTGCCAGACAGGAAAAATGAATTCCCAGGTACATAAGCTGGTGTGGAATTAAGCTCCTGCCTTTCACTCATTATATCTGTAACATTCTTTTTTATAGTTCTCTAATTCCCAACATGCTCTTCTTTTTGTACATCTTGTGTCCCCTAGCTGTGTCTATTGTCCAAATCAAGAACTGTTGTTGAATACTCTACCAGCActtatttactgttttgttttgttttataatttgtcaTTTCAGTCTACATTATTCCCCCGGCTGGATATCAACTCTACTATAACTGTAACTCTGTTAGTTTCATTTGTTATTCTAATTTATGGTTTTCCAGGTGCTCTTTTTATGTAAAGTAGTATGCATTTTTTGTCAAACATGCAGTATtggattattttacattaaattatgttttgaagTCACACTCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014687 False 1017 mRNA 0.53 1 26908358 26909374
TU89946 True 1078 lncRNA 0.40 3 26904877 26911237

Neighbor

gene id symbol gene type direction distance location
AMCG00014684 upf3a coding upstream 4063 26890732 ~ 26900814 (+)
AMCG00014680 NA coding upstream 14747 26886487 ~ 26890130 (+)
AMCG00014682 cdc16,LOC106581643,LOC107673708,LOC107597489 coding upstream 23081 26869226 ~ 26881796 (+)
AMCG00014681 NA coding upstream 38637 26859733 ~ 26866240 (+)
AMCG00014677 LOC107600373,LOC107569583,LOC107690616,LOC107748609,LOC107731761,LOC107681305 coding upstream 276170 26624761 ~ 26628707 (+)
AMCG00014685 NA coding downstream 14597 26925834 ~ 26961877 (+)
AMCG00014683 asmtl coding downstream 55508 26966745 ~ 26974382 (+)
AMCG00014690 slc25a6,slc25a5,LOC107597494,LOC108426068,LOC107756767 coding downstream 66198 26977435 ~ 26980300 (+)
AMCG00014691 ppp2r3b,LOC108426065,LOC106581654,LOC100705877 coding downstream 410377 27321614 ~ 27337656 (+)
AMCG00014701 NA coding downstream 571851 27483088 ~ 27491264 (+)
G71859 NA non-coding upstream 673312 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 893877 26010799 ~ 26011000 (+)
G71817 NA non-coding upstream 945175 25952233 ~ 25959702 (+)
G71784 NA non-coding upstream 1134388 25770209 ~ 25770489 (+)
G71763 NA non-coding upstream 1142135 25705458 ~ 25762742 (+)
G71963 NA non-coding downstream 41059 26952296 ~ 26953253 (+)
G71995 NA non-coding downstream 115538 27026775 ~ 27027272 (+)
G72072 NA non-coding downstream 563827 27475064 ~ 27479444 (+)
G72169 NA non-coding downstream 1329329 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 1386432 28297669 ~ 28300813 (+)
G71525 NA other upstream 4049231 22855342 ~ 22855646 (+)
G71004 NA other upstream 8630517 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 9417827 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 10435668 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 10765845 16129479 ~ 16139032 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 924266 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 957466 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 1391136 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 1885812 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 2336638 29247875 ~ 29256354 (+)

Expression


Co-expression Network