AMCG00014691 (ppp2r3b,LOC108426065,LOC106581654,LOC100705877)


Basic Information

Item Value
gene id AMCG00014691
gene name ppp2r3b,LOC108426065,LOC106581654,LOC100705877
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27321614 ~ 27337656 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014691
ATACCTCAGATTAGAGCCGTGTTTACTGGGAGTGCACGGGGAGAGTCAGCCGACAGAGGCTCTATGAGATCGGACATTATGAGGATGAAGGACATCTCTCTGCGGCAGGACCCTGACCTCCGGAAGGAGCTGGCGCTGCTGGCTCGGGGCTGCGATTTTGTTCTGCCGTCCCGCTTCAAGAAGAGACTGAAGGCTTTCCAACAAGTCCAGGCAGAAGAGCACAGCATCATTGATAATCCTTCAGTTCTCGAGCGGAAACCACAGCAGgCTCAGGTAAAGAAAGAAGAGCCCATAACACCAGCTTTAAGTGAAAGCATTCCCAAGTTTTTCTTCCCACGTGGACGGCCCAAAGCCAATCTCAACGTCGACACTCTCATTTCGAGGATCGAGAAGGCCTTTTCACAGTTCCCCAATGAGAGGGCCACTATTGAAGACATGGGGAAGGTAGCCAAAGCCTGCGAGTGTCCACTCTACTGGAAAGCCCCATTGTTCTGCGCTGCTGGTGGAGACAGAACAGGATTTGTGTCTGTTCACAAATTCATTGCAATGTGGAGAAAAACATTGCAGACCTGCCATGATGACGCATCTAAATTTGTTCACCTTTTGGCCAAGCCTGGCTGTAATTATCTGGAACAAGAGGACTTTATTCCATTCCTGCAGGATGTGGTCAACACACATACCGGACTCAGATTTCTAAGGGAGGCATCAGATTTCCACTCTCGTTACATTACAACAGTTATTCAGAggatatattataatgtaaaccGATCCTGGACGGGGAAAATTACCTGTTCAGAACTCAGGAAAAGCAGTTTTCTTCAGAATGTGGCGTtattggaggaggaggaggatgtcAACCAGCTCACAGAGTATTTCTCCTATGAGCATTTCTACGTCATCTACTGTAAATTCTGGGAACTGGACACTGACCACGATCTCTACATTGATCAGAAGGACCTGGCCCGACACAATGACCATGCAATCTCCCATAAAATGATCGAAAGAATATTCTCTGGAGCGGTTACcaggggcAGAAAATCACGTAAGGAAGGCAAAATGAGCTATGCAGATTTTGTATGGTTTCTGATTTCGGAAGAGGACAAGAAAACAGCCACCAGCATAGAGTACTGGTTCCGCTGCATGGACCTGGATGGAGACGGGGTGCTGTCCATGTACGAGCTGGAGTTCTTCTATGAGGAGCAGTGTCAGAAACTGGAGAACATGGCCATTGAGCCGCTGACCTTCGAGGACTGTCTCTGCCAAATGCTGGACCTCGTCAAGCCAGAAAGTGAAGGGAAGATCACCCTCCATGACCTGAAGAGATGCAAGCTGTCGCACACGTTCTTCGACACCTTTTTCAACATCGAGAAGTATCTGGACCACGAGCAGAAAGATCCCTTTTCAGTGGTGAGGGACGCGGAGACTGAGGGGCAGGAGATGTCCGACTGGGAGAAGTATGCGGCGGAGGAGTACGATATCCTGGTGGCGGAAGAGGCAGCCAATGAGCAGTATAACGACGGATACGAAAATGCCATTGATCCCATAGACCATCAGATCTCGAACGAACTGAGCCTGCGATCGGAAAAGAGGCACTTCTTCGAAATCCCCAACCCTCACTCCAGCCTGGGCCTGGACGAGTACGAGTACGAGGATGATTTTGAATGACCACGTGGAGGTATTTTGGACACTACCGGCTATGGGCAGCAGGGCTGTCATAGCCGCATTTAAAACTCATGTAATTGAATACTAAAACCGTTTCACCGAGTGTGTAGCTGTAGGCTGTTTGCACGTAACCACGGGAACAGGAAACATTGACCTGGAGTATCCAAACACTGTCACAGTAATAAGCATCTTTCCCGTTTTTGTCTAATGTACCTTACATCCATAGAGCTCTCTGCAGTGAACTGAAAGCCTCATTGTTTTCACATTGCTGTTCAACCAGACAGACCAACTGTATACATAAATTTGTTCCTGCAAACAATTTATAGACTGGAAGAGTTTTGATTGGCCAGTAGTTTTGaatgctgttttatttgtaaataggAATGCTTCTAGTATTTATTATGcaaattgttgtgtgtgtgtgtgtgagagaaaataGTGACTGGCATACGCACAGACTATAACAGAGAACCAAATCTGTTTCCTGCttcaaaaaagcaatacaatttgCTACACTGGAACTTAAAACGCTTAGACACTGAAATACACTTGAACTATTGACTGTGCACTAAGtacaaaaagcaatacatttgtcatttcttAGAATTGGATGAATTCAACATTCCAGAGATGATAACCAATCTAATTAACCAACGCATTTATCTTTGCATAACTTCAGGAGAATAATGGATGTTTCAGATTCTTAAGGGTTATCCGGGTGCCTATCAACATGTTTCACACCTATGCATTTGACcttatacaaaatatttctgtgccttgtaatatataatgtatttatcagtgtctcaatttttcattttttactgtATCAAACTTTTGTAGAACAGCTAttcttataaattatatagatgtaaatatttgttattttgtgtgtgcagtgtaaaaaaaaaaagttgtgtaaTGCTGAAATACTGTTAATGGTTTTTCTATCTGCAGAAGTACTTTAAGATTTGACATTGTACTTTAATTCAGGAAAAAAGGAaccaatttgaaaatgtttgtatattatcttgttcattttaaataaagtctctctctcaaaaTAAA

Function

symbol description
ppp2r3b Predicted to enable protein phosphatase regulator activity. Predicted to be involved in protein dephosphorylation. Predicted to be part of protein phosphatase type 2A complex. Orthologous to human PPP2R3B (protein phosphatase 2 regulatory subunit B''beta).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta-like isoform X2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014691 True 2730 mRNA 0.43 14 27321614 27337656

Neighbor

gene id symbol gene type direction distance location
AMCG00014690 slc25a6,slc25a5,LOC107597494,LOC108426068,LOC107756767 coding upstream 341314 26977435 ~ 26980300 (+)
AMCG00014683 asmtl coding upstream 347232 26966745 ~ 26974382 (+)
AMCG00014685 NA coding upstream 359737 26925834 ~ 26961877 (+)
AMCG00014684 upf3a coding upstream 420800 26890732 ~ 26900814 (+)
AMCG00014680 NA coding upstream 431484 26886487 ~ 26890130 (+)
AMCG00014701 NA coding downstream 145432 27483088 ~ 27491264 (+)
AMCG00014705 NA coding downstream 365428 27703084 ~ 27714268 (+)
AMCG00014706 NA coding downstream 505734 27843390 ~ 27861363 (+)
AMCG00014708 LOC106586788,LOC107081331 coding downstream 554195 27891851 ~ 27918923 (+)
AMCG00014711 NA coding downstream 829377 28167033 ~ 28184530 (+)
G71995 NA non-coding upstream 294342 27026775 ~ 27027272 (+)
G71963 NA non-coding upstream 368361 26952296 ~ 26953253 (+)
G71859 NA non-coding upstream 1090049 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 1310614 26010799 ~ 26011000 (+)
G71817 NA non-coding upstream 1361912 25952233 ~ 25959702 (+)
G72072 NA non-coding downstream 137408 27475064 ~ 27479444 (+)
G72169 NA non-coding downstream 902910 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 960013 28297669 ~ 28300813 (+)
G72208 NA non-coding downstream 999635 28337291 ~ 28341717 (+)
G72273 NA non-coding downstream 1189132 28526788 ~ 28578733 (+)
AMCG00014687 NA other upstream 410377 26904877 ~ 26911237 (+)
G71525 NA other upstream 4465968 22855342 ~ 22855646 (+)
G71004 NA other upstream 9047254 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 9834564 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 10852405 16465621 ~ 16469209 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 497847 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 531047 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 964717 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 1459393 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 1910219 29247875 ~ 29256354 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_03358707_03369503 PPP2R3B coding CI01000009 null 3358008 ~ 3369577 (-)