AMCG00014703 (ndp,LOC107565935,LOC106586792)


Basic Information

Item Value
gene id AMCG00014703
gene name ndp,LOC107565935,LOC106586792
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27868703 ~ 27879800 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014703
agagagagagagagagatagacataAAGGCATCTGATGTTTGAAGAACACTAGCTCAGTTCTGGGTATTGGTGCTGTAGTTGGATTGTCCCCTGTCGCAGTCAAGCAAGAGCTGGACGAGCCACAGAGGGCGAGATGGAGACACGTACCCTGCGGACTGCAAGCACATTCTGGGTCAACGCGCTGAGCTCTGGAGTTCAGTGGGGACTGCAGCTTAGTCCTCTGTAAcaggggctgtgtgtgttgggggtgctCTGGGCAGATTCACCAACAGGGGTGAGAATGAAAAACAGCGGCCCCCTTGGCATTCCTgggattgtatttttctgtatcgTATGCCCCCTGCTGGCCATGTTCCGAGGCGCGGAGGGAAAAACGGAAAACGGGAATCTGAGCGAAACTGACCCGACCAGATGCATGAGGCACCACTTTGTGGAAACCATCGGGCACCCTTTTTATAAGTGCAACTCTAAGATGGTGCTGCTGGCGCGCTGCGAGGGTCACTGCAGCCACACGTCACGCTCGGACCCTCTCATTTCCTTCAGCTCCATCCTCAAGCAGCCCTTCAAGAGTACCTGCTTCTGCTGCCGGCCTCACACCTCCAAACTGAAAGCAGTGCGTCTGCGTTGCTCGGGTGGGACACGCGTCACCGCCACGTACCGCTACATTCTGGCCTGCAACTGCGAGGAGTGCAGCTAATTCAGGGTCCAGCGCAAGAAGGCAATACGGCCAGCGGGAAGATTCCAGAAAAAGCAAACTTTTGTTGACTACCAGCATATTGTGGGTGTATGGTCCACTGTCAGTAGCttaattccattttaataaCAGTCTGTATACAGagaactttttttcttttatacgGATATCTCCCATTTGGATTTGTAATCGAGGAAGACATTATTTGGGTGGCAGTACATGAATGGACCGGACTTAAGCCAGCAGTGTTTACAAAgacttctttttaaaaacctgtTAAATGGTCTTCTGTTGCTGAACAAAATGCGAAAGCAGTGGGCTGAGAGACAAAGAAATGTATTCGCCTGTCAGCTTTTGAGCTCCATCCAACTAGGTATTATGTTATCGGTTCAAAAAATCTAACTGCAGTCAGCTTGTTGATAGCTGGCTTGAAATGGTCCAATTCTGATTGTTAAGGTACATTAACTTTGATAAGACTTGTTTTGGGGATTTGCAGTCGTTTGTACACAGCAAATCTTTTCAGTGTTATGATCCCATCTCTCTGCCGCAAgtggttgtaaaaaaaaaaggaaaaagaaacaacatcAATCTCAAAAACATTCTTGCCTTCTTCGTGAAGCATGAGTGCATCGTTTCGGCAATGCAGTCGAGCACGCCCTGTTATCTGTTGTCTCCTGTCATATTGTCCCTTTTCAATGGGAGTTAGTGCAATCGTTTAGCTGGTAGGTGACGTGATAAGGGACAACAGAATTGATCATATGACACTTGATAGAGGAACGTGACAGCGGAAGGTAGTGTCACGTTCTGGTGTAGGTTCAAATTATGTAACAAAGGACTACAAAGGCAGATGGGAAAACCTCAGCGTTTCATACGGAGATCTCCAGTAAAGGGTCATAATGGGGACTTTTCCAAATTAGGCTATAAGCACCCATGGATCAGGAGCAAACCATAGCTGAAAACAAATCGAATTGCTGAATTACCGAGCACagtatgaaaacatttgttgccctccaggaaaataaatatagtgtatatatgtttCCTGAAAATATACATGACCTGGAAAAATACAGCccttggttttttttttaaacagaaccTCTGATTCGAGCTGCTGATAGGTCTGTTAGACAGGCACTCTCGGTATGATTGCACGCAGGCTAGAGTTTCCCTGATTATTCCAAATCCTCAGGGCTTGGGATACATATTGGGGCAATGTAAACCTCATGTTCGGGAGTAGGATCAGCAGTTTTCCAGATGTGGTTAATGACATATGTATGGGGTATGGGAGGGAGCGATCTTTATGATCATTAGTGGAACAGGAGGAGGTCATGTAATTACATTGTGCTGAATGCATGCCTTGTCAATCTTGTCCCTGTGCTGTGCCATTTCAGTTTGGCCTCTCTTGGACTGGGGTCTTGTCCtccttgtttcttttctgaaaaTACCCCCCCAGTCCAGAATGTGATGCTTCGAATAGCATTCCATTCAACATACTATACTCACAAAACATCCTGGAGCCCCAAGAAGGTTGATAAATCCATCCATTATCCATCATGTGATCGGAGCAGTAAAGTAACTGACTGTATAGAAAAGACAAAGACACTGTGGCCTTTCCAGAGTCTGATGCCAGCGATTAACACTCTTCTTTGGGTGCATAAATCAAATGGGGTGATTAGGACTGAGGAGTTTATTTctattgtacattttctaagATGGACGAATCCTTGCACCACACCATATTCCATATCCTTTTCCTATCCTGAGCTCCCCCTGCCCCACATTTCCCCTCTTTTCTGTTACCTGTATCCTACTGGGCCAGGCTGGCTGTGCTCCTTGGTAACTAccaatcacatttgtttttctgtatctaTGAAGTCGTTCACTGATGAATGATCTGCAAGGTGA
>TU90175
agagagagagagagagagagagagagagatagacataAAGGCATCTGATGTTTGAAGAACACTAGCTCAGTTCTGGGTATTGGTGCTGTAGTTGGATTGTCCCCTGTCGCAGTCAAGCAAGAGCTGGACGAGCCACAGAGGGCGAGATGGAGACACGTACCCTGCGGACTGCAAGCACATTCTGGGTCAACGCGCTGAGCTCTGGAGTTCAGTGGGGACTGCAGCTTAGTCCTCTGTAAcaggggctgtgtgtgttgggggtgctCTGGGCAGATTCACCAACAGGGGTGAGAATGAAAAACAGCGGCCCCCTTGGCATTCCTgggattgtatttttctgtatcgTATGCCCCCTGCTGGCCATGTTCCGAGGCGCGGAGGGAAAAACGGAAAACGGGAATCTGAGCGAAACTGACCCGACCAGATGCATGAGGCACCACTTTGTGGAAACCATCGGGCACCCTTTTTATAAGTGCAACTCTAAGATGGTGCTGCTGGCGCGCTGCGAGGGTCACTGCAGCCACACGTCACGCTCGGACCCTCTCATTTCCTTCAGCTCCATCCTCAAGCAGCCCTTCAAGAGTACCTGCTTCTGCTGCCGGCCTCACACCTCCAAACTGAAAGCAGTGCGTCTGCGTTGCTCGGGTGGGACACGCGTCACCGCCACGTACCGCTACATTCTGGCCTGCAACTGCGAGGAGTGCAGCTAATTCAGGGTCCAGCGCAAGAAGGCAATACGGCCAGCGGGAAGATTCCAGAAAAAGCAAACTTTTGTTGACTACCAGCATATTGTGGGTGTATGGTCCACTGTCAGTAGCttaattccattttaataaCAGTCTGTATACAGagaactttttttcttttatacgGATATCTCCCATTTGGATTTGTAATCGAGGAAGACATTATTTGGGTGGCAGTACATGAATGGACCGGACTTAAGCCAGCAGTGTTTACAAAgacttctttttaaaaacctgtTAAATGGTCTTCTGTTGCTGAACAAAATGCGAAAGCAGTGGGCTGAGAGACAAAGAAATGTATTCGCCTGTCAGCTTTTGAGCTCCATCCAACTAGGTATTATGTTATCGGTTCAAAAAATCTAACTGCAGTCAGCTTGTTGATAGCTGGCTTGAAATGGTCCAATTCTGATTGTTAAGGTACATTAACTTTGATAAGACTTGTTTTGGGGATTTGCAGTCGTTTGTACACAGCAAATCTTTTCAGTGTTATGATCCCATCTCTCTGCCGCAAgtggttgtaaaaaaaaaaggaaaaagaaacaacatcAATCTCAAAAACATTCTTGCCTTCTTCGTGAAGCATGAGTGCATCGTTTCGGCAATGCAGTCGAGCACGCCCTGTTATCTGTTGTCTCCTGTCATATTGTCCCTTTTCAATGGGAGTTAGTGCAATCGTTTAGCTGGTAGGTGACGTGATAAGGGACAACAGAATTGATCATATGACACTTGATAGAGGAACGTGACAGCGGAAGGTAGTGTCACGTTCTGGTGTAGGTTCAAATTATGTAACAAAGGACTACAAAGGCAGATGGGAAAACCTCAGCGTTTCATACGGAGATCTCCAGTAAAGGGTCATAATGGGGACTTTTCCAAATTAGGCTATAAGCACCCATGGATCAGGAGCAAACCATAGCTGAAAACAAATCGAATTGCTGAATTACCGAGCACagtatgaaaacatttgttgccctccaggaaaataaatatagtgtatatatgtttCCTGAAAATATACATGACCTGGAAAAATACAGCccttggttttttttttaaacagaaccTCTGATTCGAGCTGCTGATAGGTCTGTTAGACAGGCACTCTCGGTATGATTGCACGCAGGCTAGAGTTTCCCTGATTATTCCAAATCCTCAGGGCTTGGGATACATATTGGGGCAATGTAAACCTCATGTTCGGGAGTAGGATCAGCAGTTTTCCAGATGTGGTTAATGACATATGTATGGGGTATGGGAGGGAGCGATCTTTATGATCATTAGTGGAACAGGAGGAGGTCATGTAATTACATTGTGCTGAATGCATGCCTTGTCAATCTTGTCCCTGTGCTGTGCCATTTCAGTTTGGCCTCTCTTGGACTGGGGTCTTGTCCtccttgtttcttttctgaaaaTACCCCCCCAGTCCAGAATGTGATGCTTCGAATAGCATTCCATTCAACATACTATACTCACAAAACATCCTGGAGCCCCAAGAAGGTTGATAAATCCATCCATTATCCATCATGTGATCGGAGCAGTAAAGTAACTGACTGTATAGAAAAGACAAAGACACTGTGGCCTTTCCAGAGTCTGATGCCAGCGATTAACACTCTTCTTTGGGTGCATAAATCAAATGGGGTGATTAGGACTGAGGAGTTTATTTctattgtacattttctaagATGGACGAATCCTTGCACCACACCATATTCCATATCCTTTTCCTATCCTGAGCTCCCCCTGCCCCACATTTCCCCTCTTTTCTGTTACCTGTATCCTACTGGGCCAGGCTGGCTGTGCTCCTTGGTAACTAccaatcacatttgtttttctgtatctaTGAAGTCGTTCACTGATGAATGATCTGCAAGGTGAAAAAGTATCTTCTCATAATCattcaataaaatatgattaaaggAA

Function

symbol description
ndp Predicted to enable cytokine activity. Acts upstream of or within retina vasculature development in camera-type eye. Predicted to be located in extracellular space. Predicted to be active in extracellular matrix. Human ortholog(s) of this gene implicated in Norrie disease; X-linked exudative vitreoretinopathy 2; and retinopathy of prematurity. Orthologous to human NDP (norrin cystine knot growth factor NDP).

NR:

description
norrin

GO:

id name namespace
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014703 False 2603 mRNA 0.46 3 27868715 27879755
TU90175 True 2660 TUCP 0.45 3 27868703 27879800

Neighbor

gene id symbol gene type direction distance location
AMCG00014706 NA coding upstream 7340 27843390 ~ 27861363 (+)
AMCG00014705 NA coding upstream 154435 27703084 ~ 27714268 (+)
AMCG00014701 NA coding upstream 377439 27483088 ~ 27491264 (+)
AMCG00014691 ppp2r3b,LOC108426065,LOC106581654,LOC100705877 coding upstream 531047 27321614 ~ 27337656 (+)
AMCG00014690 slc25a6,slc25a5,LOC107597494,LOC108426068,LOC107756767 coding upstream 888403 26977435 ~ 26980300 (+)
AMCG00014708 LOC106586788,LOC107081331 coding downstream 12051 27891851 ~ 27918923 (+)
AMCG00014711 NA coding downstream 287233 28167033 ~ 28184530 (+)
AMCG00014709 cask coding downstream 342861 28222661 ~ 28235915 (+)
AMCG00014710 cask coding downstream 371126 28250926 ~ 28280724 (+)
AMCG00014714 rpl8,LOC107595836,LOC107748161 coding downstream 449997 28329797 ~ 28332468 (+)
G72072 NA non-coding upstream 389259 27475064 ~ 27479444 (+)
G71995 NA non-coding upstream 841431 27026775 ~ 27027272 (+)
G71963 NA non-coding upstream 915450 26952296 ~ 26953253 (+)
G71859 NA non-coding upstream 1637138 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 1857703 26010799 ~ 26011000 (+)
G72169 NA non-coding downstream 360766 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 417869 28297669 ~ 28300813 (+)
G72208 NA non-coding downstream 457491 28337291 ~ 28341717 (+)
G72273 NA non-coding downstream 646988 28526788 ~ 28578733 (+)
G72329 NA non-coding downstream 951956 28831756 ~ 28831975 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 26832 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 957466 26904877 ~ 26911237 (+)
G71525 NA other upstream 5013057 22855342 ~ 22855646 (+)
G71004 NA other upstream 9594343 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 10381653 17364798 ~ 17487050 (+)
G72175 LOC102776245 other downstream 422573 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 917249 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 1368075 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 1388529 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 1963667 29843467 ~ 29846586 (+)

Expression


Co-expression Network