AMCG00014708 (LOC106586788,LOC107081331)


Basic Information

Item Value
gene id AMCG00014708
gene name LOC106586788,LOC107081331
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27891851 ~ 27918923 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014708
ATGAGGAGCTGCTTGGCTGACTTCACCTGTGCAGAAGCTGCTATTCATGGGGGGAGCAATGCAATCTCAAGGGAATGCAATCTCTGTCTGACGGCTGCAAAGTTGCTCGTGGAGTCAAACCTGAACCCCCTGGTGCTGGAAGCGCGGGACCGAGTGGGAGGAAGGACCTTCACTGTGCAGGGAAAATCTCATCCATTCAAGGGGCCCTTCCCACCCATGTGGAACCCCATTGCCCTGATGGACTACAACAACCTGTGGAGGAAGATGGATGAAATGGGCCGAGAGATCCCACAGGAGGCGCCATGGAGAGCACCACACGctgaggagtgggacaaaatgaCCATGAAGGATCTCTTTGACAAGCTATGCTGGACACGGGTTTCCCGACAGTTCGCCAACCTTTTTGTGAACGTCAACGTCACCTCTGAGCCTCATGAAGTTTCGGCCCTGTGGTTCCTGTGGTACGTCAAGCAGTGCGGAGGGACCATGAGGATATTCTCCACCACCAACGGGGGGCAGGAGCGGAAGTTCTTGGGTGGCTCAGGGCAGATCAGCGACCGTCTGATGAATCTGCTGGGAGACCGGGTGAAACTAGAGAAGCCGGTATGCCACATCGACCAGAGCGGGGACGGCGTGGTGGTGGAGACCCTCGACCATGAGAAGTATGAGGCCAAATATGTCATCGTTGCCACAGCTCCAGCGCTGAATCTGAAGATCCACTTCAACCCTCCTCTGCCTCCGCTGAGGAACCAGCTCATCCATCGCGTGCCCACGGGCTCCGTCATCAAGTGCATGGTCTACTACAGGGAGAACTTCTGGAGGAAGAAGGGTTACTGTGGCAGTATGGTTATTGAAGAGGAAGAAGCCCCCATCGGCTTGACACTAGATGACACCAAACCCGATGGAAGTGTGCCTGCTATCATGGGGTTCATCCTTGCACGTAAGGCCAGGAGACTAGCAGGACTGACCAAAGAAGAAAGAGTGCTTGGCAGTGAAGAAGCTTTGTATCCTGTCCATTACGAGGAGAAAAACTGGTGCGAGGAGGAATACTCTGGCGGCTGCTACACGGCTTACTTCCCCCCCGGGATCCTCACTCAGTTCGGCAAGGTTTTAAGGGAGCCTGTGGGTAAGCTGTACTTTGCTGGCACAGAGACGGCCACCGAGTGGAGTGGGTACATGGAAGGAGCTGTGCAGGCTGGCGAGAGAGCCGCCAGGGAGATTCTCCATGCGATGGGGAAGATCTCAAAAAGTGAAATCTGGAAGCCGGAACCCAAGTCTGTGGATGTCCCGGCACTTCCCTTTAAGACAACATTTTGGGAAAGGAACATGCCCTCTGTCCCGGGTTTCCTGAAGTTCATTGGCCTGTCAACGGTCTTGACTGCTGCCACTGCTGCAGGTCTTATGGCCTGTAAGAGAGGCCTTCTTGTCAGGAGCTAAGCCACTATGGGAGTCTTAAAAAATTTACAAATGTCTTTATCATAGGCCTTTTCCAGGAATTATCCCCCCAACCCTGTATTCCCCAAATCTGTCTAATCAAGAGTCTAGGATAAGTTGCGAAAAAGGGAGGGAAATTCTCATTTTATGATTTCACaaagttgtttttgtcttaaatACGTGACACTAGAAGAAGGCCTAGATGGTTTGGTATTTTAAAGACTTTTAACCTGCAAAATCTGGTGCTGAGTCACTTTGTAAAGTTGTAATAGTTTATCGTTTACTTCACAATGATTATATGTGTTGAAACAGCTTTTTCTATATAgagtcctttaaaaaaaatgacatctaACGTGTTGAAGCTGTAGACAGTGACCGGCTCAactggttgtttgttttgctttcccaACAAggattttcacacacacaagaatgaacaaatcaaaagaCCACATTCCCTGACCTTCCTGTGAAATATTCAATGATTGTATAAATTCTGCATCATCCTCGgcatctttttaatgttttatccTAACGTTTGAAAtgtcattgaaaataaatatatctcgTATCACCACAAGACACAATGTTTAGGATTATAACAAAGGAATCATTCTTGTATGATACTGTGAAATCCTTAAGGGCACCCATGCTGCCTACTTGACATCCTTTCATTGACCATTGCTGGCTACTACAATAGTGGGCATTGATTTCAAAGGAAACATGTGTGTGGATCAGAATTCCAATGGGTTCTCTGAGCAGCAAGATTGCCATAGATATAAAGTCCATACTCACACAACTGAATCAGTAAaggttttttaatatatttaatctcAGAATGATGTATACGAGCACAAAGCAAAGCCTTTTATGTCACCTCTGCTTAGAATTTCAAAGGTAATTTTCTGTGCTACCTTGTTCTAGAGCCACcttgtataattaattaaaccacaatgaatgtatttatcagACACACAGCTTCTCTCATTCTTATTTCAGTGATGGATATAACCTTGGGCAAGattgtatttgaataattgaataagaATTATTAAAGTAGATATCATTAAGTTTTCTCATGAAACCAAAACGTAGAAGGGATGTGTTCTTCGTGAATATTTTTGCTCAGCCTAttgtaattattcttttttttttttctgatataaacaataaaaagactATCATTGCATGAAGAGTCAGATCTAATCTGACccttatttagattttatttattttttgtcattaggAGAAAAAAATTTGCTGAAAATGTTGTGTAAGATTAGCCCACACAATCCGACAATGTGATCTGAATTTGATTTAACAATCAAAGCTGATGCCGATAacctttattacatttttaaaggaatcaCTTCATTGATATCTTCAAAGCcgaaggaaaatatatatatttccggGGTATGAATTATGTTCAACTGtgtgaatattttattgtgaatattaattaatttgtatttaaaaatactgagtgtaaacctgcattttctttctaaatcaTGAGTCAACACTTTAACAAGGGTATGAATACATATggatttgtatatatgtgtgtgtatctatatatcatatacgcatgtttatgtttgttcataattttcttctttccaAAGAAAGAATGTATATTCATAgcctacacacactcacacacacacacacatatatctctatatatatctatatatctatatctatatctatatctatatctatatctata

Function

NR:

description
PREDICTED: amine oxidase [flavin-containing] isoform X2

GO:

id name namespace
GO:0042402 cellular biogenic amine catabolic process biological_process
GO:0042135 neurotransmitter catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006584 catecholamine metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008131 primary amine oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014708 True 3169 mRNA 0.42 14 27891851 27918923

Neighbor

gene id symbol gene type direction distance location
AMCG00014706 NA coding upstream 30488 27843390 ~ 27861363 (+)
AMCG00014705 NA coding upstream 177583 27703084 ~ 27714268 (+)
AMCG00014701 NA coding upstream 400587 27483088 ~ 27491264 (+)
AMCG00014691 ppp2r3b,LOC108426065,LOC106581654,LOC100705877 coding upstream 554195 27321614 ~ 27337656 (+)
AMCG00014690 slc25a6,slc25a5,LOC107597494,LOC108426068,LOC107756767 coding upstream 911551 26977435 ~ 26980300 (+)
AMCG00014711 NA coding downstream 248110 28167033 ~ 28184530 (+)
AMCG00014709 cask coding downstream 303738 28222661 ~ 28235915 (+)
AMCG00014710 cask coding downstream 332003 28250926 ~ 28280724 (+)
AMCG00014714 rpl8,LOC107595836,LOC107748161 coding downstream 410874 28329797 ~ 28332468 (+)
AMCG00014721 med14,LOC106581951 coding downstream 488294 28407217 ~ 28441529 (+)
G72072 NA non-coding upstream 412407 27475064 ~ 27479444 (+)
G71995 NA non-coding upstream 864579 27026775 ~ 27027272 (+)
G71963 NA non-coding upstream 938598 26952296 ~ 26953253 (+)
G71859 NA non-coding upstream 1660286 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 1880851 26010799 ~ 26011000 (+)
G72169 NA non-coding downstream 321643 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 378746 28297669 ~ 28300813 (+)
G72208 NA non-coding downstream 418368 28337291 ~ 28341717 (+)
G72273 NA non-coding downstream 607865 28526788 ~ 28578733 (+)
G72329 NA non-coding downstream 912833 28831756 ~ 28831975 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 12051 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 49980 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 980614 26904877 ~ 26911237 (+)
G71525 NA other upstream 5036205 22855342 ~ 22855646 (+)
G71004 NA other upstream 9617491 18271854 ~ 18274360 (+)
G72175 LOC102776245 other downstream 383450 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 878126 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 1328952 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 1349406 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 1924544 29843467 ~ 29846586 (+)

Expression


Co-expression Network