AMCG00014709 (cask)


Basic Information

Item Value
gene id AMCG00014709
gene name cask
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28222661 ~ 28235915 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014709
CCCCACTGTGTGTTGCTGGCATCCAAGGAGAACTCCGCCCCGGTGAAACTGGGTGGATTCGGAGTGGCCATACAACTTGGAGAATCTGGACTGGTTGCAGGagGCCGAGTGGGAACGCCTCATTTTATGGCCCCCGAAGTGGTGAAGAGGGAGCCCTATGGGAAGCCAGTGGACGTCTGGGGCTGCGGAGTAATTCTCTTCATTTTACTCAGCGGGTGTCTGCCGTTTTATGGGACCAAGGAAAGGCTTTTTGAAGCAATCATTAAAGGGAAATACAAGACCCCCAGGCCACCtgtaatgtgtctgtgtgcacacACTTTGCAGATGAATCCCCGGCAGTGGAGCCATATCTCGGAAAGTGCCAAAGACCTGGTACGCCGCATGTTGATGCTGGACCCCGCAGAGAGGATAACCGTGTACGAGGCCCTCAACCACCCCTGGCTCAAGGAGAGAGACCgttatgcctacaaaatccacCTCCCTGAGACAGTGGAGCAGCTGAGGAAATTCAACGCCAGAAGGAAATTAAAGGGTGCTGTTTTAGCTGCTGTTTCCAGCCATAAGTTTAACTCCTTCTATGGAGACCCACCTGAGGAGCTCCCCGACTTCTCTGAAGACCCCACTTCCTCAGGGGCGGTGTCGCAGGTGCTGGACAGTCTGGAGGAGATCCACGCCCTGACGGACTGCAGCGAGAAGGACCTGGACTTCCTGCACAGCGTGTTCCAGGACCAACACCTCCACACGCTGCTGGAT

Function

symbol description
cask Enables protein serine/threonine kinase activity. Involved in several processes, including negative regulation of cell-matrix adhesion; negative regulation of keratinocyte proliferation; and negative regulation of wound healing. Located in cell-cell junction; cytoplasm; and nuclear lumen. Colocalizes with basement membrane. Implicated in FG syndrome and syndromic X-linked intellectual disability Najm type.

NR:

description
PREDICTED: peripheral plasma membrane protein CASK isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014709 True 753 mRNA 0.55 6 28222661 28235915

Neighbor

gene id symbol gene type direction distance location
AMCG00014711 NA coding upstream 38131 28167033 ~ 28184530 (+)
AMCG00014708 LOC106586788,LOC107081331 coding upstream 303738 27891851 ~ 27918923 (+)
AMCG00014706 NA coding upstream 361298 27843390 ~ 27861363 (+)
AMCG00014705 NA coding upstream 508393 27703084 ~ 27714268 (+)
AMCG00014701 NA coding upstream 731397 27483088 ~ 27491264 (+)
AMCG00014710 cask coding downstream 15011 28250926 ~ 28280724 (+)
AMCG00014714 rpl8,LOC107595836,LOC107748161 coding downstream 93882 28329797 ~ 28332468 (+)
AMCG00014721 med14,LOC106581951 coding downstream 171302 28407217 ~ 28441529 (+)
AMCG00014722 NA coding downstream 209061 28444976 ~ 28450107 (+)
AMCG00014720 NA coding downstream 220280 28456195 ~ 28483850 (+)
G72072 NA non-coding upstream 743217 27475064 ~ 27479444 (+)
G71995 NA non-coding upstream 1195389 27026775 ~ 27027272 (+)
G71963 NA non-coding upstream 1269408 26952296 ~ 26953253 (+)
G71859 NA non-coding upstream 1991096 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 2211661 26010799 ~ 26011000 (+)
G72169 NA non-coding downstream 4651 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 61754 28297669 ~ 28300813 (+)
G72208 NA non-coding downstream 101376 28337291 ~ 28341717 (+)
G72273 NA non-coding downstream 290873 28526788 ~ 28578733 (+)
G72329 NA non-coding downstream 595841 28831756 ~ 28831975 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 342861 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 380790 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 1311424 26904877 ~ 26911237 (+)
G71525 NA other upstream 5367015 22855342 ~ 22855646 (+)
G71004 NA other upstream 9948301 18271854 ~ 18274360 (+)
G72175 LOC102776245 other downstream 66458 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 561134 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 1011960 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 1032414 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 1607552 29843467 ~ 29846586 (+)

Expression


Co-expression Network