AMCG00014710 (cask)


Basic Information

Item Value
gene id AMCG00014710
gene name cask
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28250926 ~ 28280724 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014710
CTGTATGACAAGATTAATACAAAGTCCTCCCCGCAGATCAGGAACCCTCCGAGTGATGCTGTACAGAGAGCCAAAGAGGTACTGGAAGAGATTTCTTGTTACCCTGAGAACAACGATGCTAAAGAACTGAAGCGGATCCTCACACAGCCCCATTTTATGGCCTTACTGCAGACCCATGATGTTGTGGCCCACGAGGTGTACAGTGACGAAGCTCTGAGAGTCACCCCGCCGCCCACCTCCCCCTACCTGAACGGAGACTCCCCGGAGAGCGCCAACGGCGACATGGACATGGAGAACGTCACCCGGGTGCGGTTGGTCCAGTTCCAGAAGAACACGGATGAGCCCATGGGTATTACTCTGAAGATGAACGACCTGAATCACTGCATTGTTGCCAGAATAATGCACGGAGGAATGATACACAGACAAGGAACACTGCATGTGGGAGATGAAATCAGAGAGATCAATGGTATCAGCGTAGCCAACCAAACAGTGGAGCAACTGCAGAAGATGCTAaGGGAAATGCGAGGGAGTATCACCTTCAAGATAGTGCCAAGTTACCGCACCCAGTCTTCATCTTGTGAGGACTTGCCAGCGACTACCCAGCCGAAAGGACGACAGATCTATGTAAGAGCACAGTTTGAGTATGATCCGGCCAAGGACGACCTCATCCCCTGCAAGGAGGCAGGCATCAAGTTCCGGGTGGGTGACATCATCCAGATCATCAGCAAGGACGACCACAACTGGTGGCAGGGCAAGCTGGAAAATGCCAAGAACGGGACAGCAGGTCTCATCCCGTCTCCCGAGCTCCAGGAGTGGCGTGTAGCATGTATAGCAATggagaaaaccaaacaagaGCAGCAAGCCAGCTGTACCTGGTTTggcaagaagaagaagcagtACAAAGACAAATACCTAGCGAAGCACAATGCAGTTTTCGATCAACTAGATCTCGTCACGTATGAAGAAGTAGTGAAATTACCAGCATTCAAAAGGAAAACACTAGTCTTATTAGGTGCGCATGGTGTTGGCAGGagacacattaaaaacacactaatCACAAAGCATCCTGACAGATTTGCCTACCCCATTCCACACACAACCAGACCTCCAAAGAAAGACGAAGAAAATGGCAAGAACTATTACTTTGTATCACACGACCAAATGATGCAGGACATCTCTAACAACGATTACCTGGAGTACGGCAGCCACGAGGACGCCATGTACGGGACGAGGCTGGAGACGATACGCAAGATCCACGAGCAAGGGCTGATAGCAATACTAGACGTGGAGCCACAGGCCCTGAAAGTCCTGAGGACGGCGGAGTTCGCACCCTACGTCGTCTTCATCGCCGCCCCTACCATCACCCCCGGCATCAATGAGCTTCCCAGTTCCTCTTTGCGCCCTCtcactcattctctctctctctttctgcgtCATACCCATCAGGATGAGTCGCTGCAGAGGCTGCAGAAGGAGTCGGAGATCCTCCAGAAGACGTACGCGCACTACTTCGACCTGACCATCATCAACAACGAGATCGACGAGACCATCAGACACCTGGAGGAAGCCATTGACGTGGTGTGCACAACGCCCCAGTGGGTGCCTGTCTCCTGGGTCTACTAG

Function

symbol description
cask Enables protein serine/threonine kinase activity. Involved in several processes, including negative regulation of cell-matrix adhesion; negative regulation of keratinocyte proliferation; and negative regulation of wound healing. Located in cell-cell junction; cytoplasm; and nuclear lumen. Colocalizes with basement membrane. Implicated in FG syndrome and syndromic X-linked intellectual disability Najm type.

NR:

description
PREDICTED: peripheral plasma membrane protein CASK isoform X12

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K06103 CASK; calcium/calmodulin-dependent serine protein kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014710 True 1623 mRNA 0.52 15 28250926 28280724

Neighbor

gene id symbol gene type direction distance location
AMCG00014709 cask coding upstream 15011 28222661 ~ 28235915 (+)
AMCG00014711 NA coding upstream 66396 28167033 ~ 28184530 (+)
AMCG00014708 LOC106586788,LOC107081331 coding upstream 332003 27891851 ~ 27918923 (+)
AMCG00014706 NA coding upstream 389563 27843390 ~ 27861363 (+)
AMCG00014705 NA coding upstream 536658 27703084 ~ 27714268 (+)
AMCG00014714 rpl8,LOC107595836,LOC107748161 coding downstream 49073 28329797 ~ 28332468 (+)
AMCG00014721 med14,LOC106581951 coding downstream 126493 28407217 ~ 28441529 (+)
AMCG00014722 NA coding downstream 164252 28444976 ~ 28450107 (+)
AMCG00014720 NA coding downstream 175471 28456195 ~ 28483850 (+)
AMCG00014724 NA coding downstream 302745 28583469 ~ 28590960 (+)
G72072 NA non-coding upstream 771482 27475064 ~ 27479444 (+)
G71995 NA non-coding upstream 1223654 27026775 ~ 27027272 (+)
G71963 NA non-coding upstream 1297673 26952296 ~ 26953253 (+)
G71859 NA non-coding upstream 2019361 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 2239926 26010799 ~ 26011000 (+)
G72173 NA non-coding downstream 16945 28297669 ~ 28300813 (+)
G72208 NA non-coding downstream 56567 28337291 ~ 28341717 (+)
G72273 NA non-coding downstream 246064 28526788 ~ 28578733 (+)
G72329 NA non-coding downstream 551032 28831756 ~ 28831975 (+)
G72341 NA non-coding downstream 638252 28918976 ~ 28921290 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 371126 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 409055 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 1339689 26904877 ~ 26911237 (+)
G71525 NA other upstream 5395280 22855342 ~ 22855646 (+)
G71004 NA other upstream 9976566 18271854 ~ 18274360 (+)
G72175 LOC102776245 other downstream 21649 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 516325 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 967151 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 987605 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 1562743 29843467 ~ 29846586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_19386293_19411861 CASKA, CASK coding CI01000340 null 19386163 ~ 19413777 (+)