AMCG00014714 (rpl8,LOC107595836,LOC107748161)


Basic Information

Item Value
gene id AMCG00014714
gene name rpl8,LOC107595836,LOC107748161
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28329797 ~ 28332468 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014714
CCGGGTTTAGGTAGGGGAATGGCGGATATTTATCTCATGTTAAATCCGACTTTAATCTCTGTATTTATTATCCCATCCATCCAGATTTGCCctttgtatatataaagtaacaACTTGCACAATGGGACGTGTCATCAGAGGACAGAGAAAAGGTGCGGGCTCCGTCTTCAAGGCCCACGTCAAGCACAGGAAGGGGGCTGCCAAGCTCAGATCTATTGACTTCGCTGAGCGCCATGGCTACATCAAGGGGATCGTGAAGGATATCATTCACGATCCTGGCCGTGGAGCCCCCCTGGCCAAGGTGGCCTTCAGGGACCCCTACAGATTCAAGAAGAGGACTGAACTCTTCATCGCAGCGGAGGGCATCCACACCGGACAGTTCATCTACTGTGGCAAGAAGGCTCAGCTGAACATTGGCAATGTGCTGCCAGTGGGCACCATGCCCGAGGGTACCATTGTGTGCTGCCTGGAGGAGAAACCTGGTGACCGTGGCAAGCTGGCTCGTGCCTCCGGGAACTACGCCACAGTCATCTCCCACAACCCAGAAACCAAGAAATCCAGAGTGAAGCTGCCCTCCGGCTCCAAGAAAGTCATCTCTTCTGCCAACAGAGCCGTTGTCGgtcTCGTTGCTGGTGGTGGTCGTATTGACAAGCCCATCCTGAAGGCGGGTCGTGCCTACCACAAGTACAAGGCCAAGAGAAACTGCTGGCCCCGTGTCCGTGGTGTGGCCATGAACCCTGTTGAGCATCCCTTCGGTGGTGGTAACCATCAGCATATTGGCAAGCCCTCCACTATCAGGAGGGACGCCCCAGCTGGTCGTAAGGTCGGTCTCATCGCTGCCCGTCGTACTGGCAGACTGCGTGGAACAAAGACCGTCCAGGAGAAGGAAAACTAAACTACAGTGTCTCTTCATAATAAAACGTgttccaaaaaaaaacaa

Function

symbol description
rpl8 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL8 (ribosomal protein L8).

NR:

description
PREDICTED: 60S ribosomal protein L8 isoform X1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015934 large ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02938 RP-L8e, RPL8; large subunit ribosomal protein L8e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014714 True 940 mRNA 0.53 6 28329797 28332468

Neighbor

gene id symbol gene type direction distance location
AMCG00014710 cask coding upstream 49073 28250926 ~ 28280724 (+)
AMCG00014709 cask coding upstream 93882 28222661 ~ 28235915 (+)
AMCG00014711 NA coding upstream 145267 28167033 ~ 28184530 (+)
AMCG00014708 LOC106586788,LOC107081331 coding upstream 410874 27891851 ~ 27918923 (+)
AMCG00014706 NA coding upstream 468434 27843390 ~ 27861363 (+)
AMCG00014721 med14,LOC106581951 coding downstream 74749 28407217 ~ 28441529 (+)
AMCG00014722 NA coding downstream 112508 28444976 ~ 28450107 (+)
AMCG00014720 NA coding downstream 123727 28456195 ~ 28483850 (+)
AMCG00014724 NA coding downstream 251001 28583469 ~ 28590960 (+)
AMCG00014723 NA coding downstream 258610 28591078 ~ 28609187 (+)
G72173 NA non-coding upstream 28984 28297669 ~ 28300813 (+)
G72169 NA non-coding upstream 32313 28240566 ~ 28297484 (+)
G72072 NA non-coding upstream 850353 27475064 ~ 27479444 (+)
G71995 NA non-coding upstream 1302525 27026775 ~ 27027272 (+)
G71963 NA non-coding upstream 1376544 26952296 ~ 26953253 (+)
G72208 NA non-coding downstream 4823 28337291 ~ 28341717 (+)
G72273 NA non-coding downstream 194320 28526788 ~ 28578733 (+)
G72329 NA non-coding downstream 499288 28831756 ~ 28831975 (+)
G72341 NA non-coding downstream 586508 28918976 ~ 28921290 (+)
G72353 NA non-coding downstream 648654 28981122 ~ 28985576 (+)
G72175 LOC102776245 other upstream 25724 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 449997 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 487926 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 1418560 26904877 ~ 26911237 (+)
G71525 NA other upstream 5474151 22855342 ~ 22855646 (+)
AMCG00014729 NA other downstream 464581 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 915407 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 935861 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 1510999 29843467 ~ 29846586 (+)
G72605 NA other downstream 1518982 29851450 ~ 29851821 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_02591882_02593586 RPL8.S, RPL8 coding CI01000009 null 2591863 ~ 2593761 (-)