AMCG00014715 (ddx3x,LOC108412429,LOC102776245,LOC107564811)


Basic Information

Item Value
gene id AMCG00014715
gene name ddx3x,LOC108412429,LOC102776245,LOC107564811
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28289355 ~ 28315398 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014715
CTCCATTCCACAGGCCAGTGGAAGGTGTCGGTTAAAAAGGCTCGAGCCGAGTACAGAGACGGACGTACgtataattaaaggaaaactaaatatttatctttatttgtatatacatatacacacttcTATTAATAATTCGAAATACATGAGTCTGGGACCGTGAAGAGAATCGACATAGGAACGAGGAAAACCGAAACGACGAAAGAAAACCATCATTGAGAAGTATAtcgaaaaaagaaaaggctttcTCTCTCAACGAAAATCAATCCTCCTTATTCTTTAGTTATGAGTCATGTGGCCGTCGAAAATGCACCCAGCCTAGACCAGCAGCTTGCTGGCCTAGACTTGAACTCCGCAGCTGACGGACAGGGCGGAGGCGGCGCTGGCAGACGTTACATTCCACCTCATTTACGGAACAAAGAGGCATCCAAGAATGATTCTCCTGGTTGGGACAATGGACGCAGCAATGGTTTTGTCAACGGATATCACGATGGCAGGGATAATCGCATGAATGGAGACCGTGGCAACTATGGAGGAAGAGGAGCCACCCGAGGTGACCGAGGTGACCGAGGCGGGCGTGGCGGGTTCCGTGGAAACAGAAGTGGTGGCTCTTTTAACCAGTCGCAGCCAATGCAGAACTCAGGACAGTAGTGGATGGAATGCTTCCAAAGACCCCTACACTAGCTTTGGAGGGCGTACTGATAGAGGCAAATCATCCTTCTTCAATGACCGTGGATCTGGGTCAAGAGGAAGTGAACTCTTCTCTGGAAGCAACACAGGGATAAACTTTGAGAAATACGATGACATTCCTGTTGATGCCACTGGTAATGAATGCCCTCCACATATTGAAAGTTTCTGTGACCTTGAAATGGGAGAAATCATCATGGGCAATATCAACCTTAGCCGTTACACTCGCCCTACTCCAGTCCAGAAATATGCTATTCCAATCATCAAGTCAAAGAGAGACCTAATGGCTTGTGCTCAGACAGGCTCTGGGAAAACCGCAGCGTTCCTGCTACCAGTGCTGAGTCAGATTTACACAGAAGGCCCAGGAGAAGCACTCCAAGCTGCCAAGTCCAGCGGCCAGgaaaatggaaaatatggaCGCCGCAAACAGTATCCAATTGCTTTGATTTTGGCTCCCACTAGAGAGTTGGCATTACAAATCTATGATGAAGCCAGAAAGTTTGCATACCGCTCCAAAGTGCGACCTTGTGTGGTGTATGGTGGGGCGGACATTGGGCAGCAGATTCGGGAACTGGAGCGAGGATGTCATCTGCTGGTTGCAACACCTGGACGTCTTGTGGACATGATGGAGAGAGGAAAGATTGGCCTGGATTACTGCAACTACTTGGTGTTGGATGAGGCTGACAGAATGCTTGACATGGGGTTTGAGCCTCAGATTCGCCGTATTGTGGAGCAGGACACCATGCCTCCAAAAGGACTGCGTCATACCATGATGTTCAGTGCTACCTTCCCTAAGGAAATCcagATCCTTGCCCGTGACTTCCTGGAGGAGTACATCTTCTTGGCTGTTGGTCGTGTTGGCTCCACATCTGAAAACATCACCCAAAAGGTGGTTTGGGTAGAGGAAAGCGACAAACGGTCCTTCCTGCTTGATCTCCTTAATGCTACAGGCAAAGATTCTTTGACCCTGGTGTTTGTGGAAACCAAGAAGGGTGCGGATGCCCTGGAGGACTTCCTGTACCGTGAAGGGTATGCCTGCACCAGCATCCATGGAGACCGCTCACAGAGAGACCGAGAGGAGGCGCTTCATCAGTTCCGCTCAGGCCGCTGCCCCATCTTGGTTGCCACAGCTGTGGCTGCTCGTGGATTGGACATCTCCAATGTGAAACATGTCATCAACTTTGACCTGCCAAGCGATATTGAGGAGTATGTCCACCGTATTGGTCGTACTGGCCGTGTCGGAAACCTTGGTCTGGCTACATCATTCTTCAatgagaaaaacagcaacataacCAAGGACCTCCTTGACATTTTGGTTGAAGCCAAACAGGAGGTTCCATCTTGGCTGGAGAACCTAGCCTATGAACAGCAGCACAAGACGACCACCCGTGGCCGTTCCAAGAGGTTCTCCGGAGGGTTTGGTGCCAGGGATTACCGTCAGACCAacagtggcagcagcagcagctttgGCAGCCGTGGCGGTCGCAGCGCTGGTGGCCATGGAGGAAACCGAGgatttggtggtggtggtgTGTCTTTGTTCCTAATCCCCCCTGTCCTCGCCTCCTGGGCCTGTGCCCGCTCCTGCCCTGCCCGCTGCACCTGCACACAGGAGAGgagctgtgcagtgctgtgtgacCGCGCCGGCCTCCCCGACCTGCCCAAGGAGTTCCCCTGTGAGGCGGCCTCCATCAACCTGGAGAAGAACAGCATCAAGTTCCTGTCGGAGAGGGCTTTCGGGACCCTGCCGTCCCTGCGCTCCTTGTCGCTGGACCATAACAACATCTCCTTCATCACACCGGGAGCCTTCAAGGGGCTGCCCAACCTGGTGGAGCTGAAGATGGCCCACAACGAGTACATCCGCTACCTGCACACGCGCACCTTCACCTCCCTCAAGCGCATGGTGCGGCTGGACCTGTCTGACTGCAACCTCTTCAACATGCCCGACCGCATCTTCCTGGAGCAGGCAGCGCTCCGGGAACTCCTGTGCTTCCAGAATAATTTCCGCCGTATTCCTGGAGCCATCCGCGGCATGGAGAACCTCACCCATGTCTACCTGGAACGCAACAAGATCGAGGCTGTGGCCTACAACTCCCTGCAGGGCCTTGCCAAACTCAAATACCTGAACCTGCAGGAGAACCGCATCAATGTCATCCATGACCAGGCCTTCCAGGACTGTCAGCATCTGGAGAACTTCTACCTGAATGACAACCTCCTGTCAGACCTGCCCCGGGATTCCTTTAAAGGGCTGCGGCGgctcaagatgctcaacctcgGGGGAAACGTCCTCACCAATGTCTCCAGGACCTGGTTCGGTGACCTGATGGAGCTGGAGATTCTCTACCTGGACCGGAACCAGATTTCCTTCATTGAGGAGGGGGCCTTTGAGAACCTCACCAGCCTCATGTCCCTCCACCTCAACAGCAACAACCTGACCACCTTGCCTTTCTCAGTCTTCCAGCCCGTCTACTTTCTGGGGCGGCTCTATCTGTTCCGCAACCCCTGGAACTGTGACTGTGGGTTGGAGTGGCTCAAGGAGTGGATGGAGAGCTACAACCTGGTCAGGGACATCCCCTGCGTCTCCCCCTCCTCCGTGGCTGGCCTGGACCTCTGTGAGGTGGTCTTCCCCCGATCCCCAGATGGCCTCTGTGTGGACCCAGCTGAGCTCAACCTTACCTCCTTTGCTCCCACGGCAGCCGAGGCCCTGCACTCCACCACCGAGAACAAGTTCAGCAGCCTCATCTCCAGGCTCATGCAGCAAGAGCTCCACGACGGGCCCTTCAACTCCACCGTGATATTCAGGAACAACTCCCTCATGGATGAATTGGATAATCGGGTGTCTGCAGCAGCCATCCCTTTTAGTGCCAGCAAACTGCTCTGTGTAGGGGTCgtacatttccttttcaaaggATGTCTATAG

Function

symbol description
ddx3x Enables several functions, including helicase activity; nucleic acid binding activity; and nucleoside-triphosphatase activity. Involved in several processes, including positive regulation of type I interferon production; regulation of cellular protein metabolic process; and regulation of signal transduction. Located in several cellular components, including cell leading edge; centrosome; and cytoplasmic stress granule. Colocalizes with cytosolic small ribosomal subunit and eukaryotic translation initiation factor 3 complex. Implicated in syndromic X-linked intellectual disability.

NR:

description
PREDICTED: putative ATP-dependent RNA helicase an3 isoform X4

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K11594 DDX3X, bel; ATP-dependent RNA helicase DDX3X

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014715 True 3607 mRNA 0.53 17 28289355 28315398

Neighbor

gene id symbol gene type direction distance location
AMCG00014713 NA coding downstream 68869 28219392 ~ 28220486 (-)
AMCG00014712 NA coding downstream 84394 28061628 ~ 28204961 (-)
AMCG00014707 kdm6a coding downstream 526942 27717966 ~ 27762413 (-)
AMCG00014702 ccdc80,LOC107695464,LOC107756780,LOC107673676,LOC107748150 coding downstream 780213 27492028 ~ 27509142 (-)
AMCG00014697 atg3,LOC107752093,LOC107659953 coding downstream 806675 27470289 ~ 27482680 (-)
AMCG00014716 usp9x,LOC108272755,LOC107595873 coding upstream 25753 28341151 ~ 28380053 (-)
AMCG00014717 NA coding upstream 172231 28487629 ~ 28490563 (-)
AMCG00014719 NA coding upstream 178708 28494106 ~ 28494486 (-)
AMCG00014718 NA coding upstream 179109 28494507 ~ 28495026 (-)
AMCG00014730 NA coding upstream 614967 28930365 ~ 28951352 (-)
G72146 NA non-coding downstream 427980 27856739 ~ 27861375 (-)
G72139 NA non-coding downstream 451428 27836339 ~ 27837927 (-)
G72089 NA non-coding downstream 758712 27530296 ~ 27530643 (-)
G72049 NA non-coding downstream 870310 27418816 ~ 27419045 (-)
G71961 NA non-coding downstream 1356718 26932268 ~ 26932637 (-)
G72280 NA non-coding upstream 263011 28578409 ~ 28578734 (-)
G72305 LOC100136012 non-coding upstream 331097 28646495 ~ 28646811 (-)
G72306 NA non-coding upstream 340168 28655566 ~ 28655765 (-)
G72307 NA non-coding upstream 342679 28658077 ~ 28658299 (-)
G72317 NA non-coding upstream 358983 28674381 ~ 28766089 (-)
AMCG00014692 LOC107756725 other downstream 919828 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 984758 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 6044440 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 9064125 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 9085788 19201803 ~ 19203567 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 14341 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 1073892 29389290 ~ 29398305 (-)
AMCG00014775 NA other upstream 2526125 30841523 ~ 30846800 (-)
G73047 NA other upstream 3947769 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 4139908 32455306 ~ 32555945 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_02601021_02609375 DDX3X, DDX3A coding CI01000009 null 2601021 ~ 2609377 (+)