AMCG00014725 (lrrc58,LOC106574305)


Basic Information

Item Value
gene id AMCG00014725
gene name lrrc58,LOC106574305
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28767435 ~ 28779290 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014725
AATGCTGACCAATGACTTTCCCATGCAGGGAGTTATCTAAGGACGGGGCGGGGACAGGGCTGCGCGGCCCCGGAACCTGGACTGGGTATTGATATTTGCTGATGAGGCGTTTGCGGTATTATGAGTTAAACACGTTCCAGGTTCTTTATATACAGCTATATGGATCTATTTTCTGGTCTTCTTTAGGATGTTAAATGAGTGAAATTTGCAGCCTACGCAGAAGCAGTGTGGATGTCATTCTGGGGTGTGCGGTAGCTGCAGTCCAGTcgatgcttttttttaattttatttctttttctctctcggggggtgattattatttttcatttgaaaggcaCCCGTCGTTCTCGCTTGGAAAACTGGACTGTTGCGGAAAATGGACGGCTATGAAGGAGGCACTGGGGACACTTTGAATCTGTCCCGGCTCAATCTGGAAAGCCTGGACTTGGATGAGATGAGCCAGGATCGGAAGCGAGAAACCCAGCAGCTGTATCTGCCCTACAACCGGTTCACGGTCCTGCCCGCCTCGATCAGTCTTTTCTCCAACCTCGTCTTTCTGGACATCAGCCACAATGGACTGGCGTTCATCTGTGAGGACATCCTGCGCCTCTCCAAGCTTAAGACCCTCATAGCCAAAAACAACAGGCTGGACGAGTTCTCCCTCCCCAAAGACTTCGGCTCCATGTCGCTGGAAGTGATCAACTTCAGTGGGAACCGATTCGAGGAGGTCCCGAGTCAGTTCTTGAAACTACAGACACTGCATTACCTCTCCCTAGGGGGGAACAGACTCAAAACAATCCCCTCCGAAATTGAGAATTTAACAAGTCTGGAGATGCTGTACCTCGGAGGCAATGCCATTTCCTCCATCCCTCCTGAGCTCGCCAACCTCCGTTACCTCAGTTACCTGGTCTTGTGTGACAACCGGATACAGAGCATCCCTCCGCAGCTCACACAGCTACACTCTCTGCGATCCCTGAGCCTCCACAACAACCTGCTCACCTACCTGCCCCGGGAGATCCTCAGCCTCATTCACCTGCAGGAGCTCAGTCTGCGCGGCAACCCGCTGGTCGTGCGATTCGTTAAGGACATGACCTATGACCCCCCCTCGCTCCTGGAGCTGGCAGGGCGCACCATCAAATCGCGGAATCTGCCATACACCCCTTGGGACCTGCCCGGGAACTTGGTCAGATACCTGGACTTGGCCAGCAAGTGCCCCAACCCAAAGTGTGGAGgCGTTTACTTTGACTCCTGTGTGCGTCACATCAAGTTTGTGGATTTCTGTGGTAAATACCGTCTTCCCCTGATGCACTACCTGTGCTCTCCAGAGTGCACTTCCCCCTGTAGCTCCAACCCACAGAGCGACGCTGACTCGGAGGACGAGAGCAGCGTCCCGGCTCACAGGATGCAGAAAGTACTTCTGGGATAGGAGCTGTTACACCTTGTCCtgcaacactacagtacacaaaatgaccttaatgATTATTTTCCAAAAAGGCTTGATGAACCGTTTCTAACATAAAGCTAACTACTCCCAACTAAAACACTATTGGCTTCTTTGTTTCAATGGAACATGAGTCAATAACCTtcagtgcttttttatttttgtccaaataagcatgttaattattttttgcatagtGGTGAACCAGCTTATTCAAATAGATGTTGAAAATGTgaaggatatatatttttttttttgctgttatcaTATTTACTGATGTTTACATGACTGATGTTTTGGAATACATATATGCACCCACAAGATGTATTTCAAAATCCTTAGATTTGAGAATAAAAGGAGTGTGGGGAGGGGAATTGAGtatgttaaaatggaaaaatgttaaaaggaAAAAGCTGTACATTTGATCAAGGTTTGACTAACAATGCCACAGATTCATAATACAGTTGTTTACGCACAAATCCTTAAAGCCTGACTCGGACACTGTGGAGAAATTCAGATTTATACAAAGGCTTCTGAGATGGGGAGCTCAGTCAATTATACATATAAGCAAGATGCAATGTTTAAATGCAGTGACCTAGCACAACCTATTTcaagctatttaaaatatattttgtttttgttttgttttctctcccaaggtattttcacagtttttaaatgttaatcaaaacaaatcaaagtaattttaaataccCAGATCATAGACCCACCTGTTACTGGTCACTAAAAAGTTTACATGGTATTAGCTAGAGTTGGGGCGAAAATATTTTGACCAAGTTTgtccattttttatttgcatttccacAGAATACAGATTTAGCCATATTTGTGGTATCGGTAGCTTCATCCGAGTTTGACTGTGTTCTGTCTTTGAATATTTCACTGTGCTCATTATAGGCAGAGCATTACCTTATAATGTGTCACACAACTGCCAGCAAATGTTTAGTCATTTAAAGTTGTTAACTAATTGAAAGCAGTCGATTACTGGCATCAATTAACTGACTAGTACAATGTACTAGTGTGTAAGGAAAATGGTGTATCCAATCTTTATACATGCCACCATCATTTTATCCTGGTTGATTGGCAATTTTTTGTATGTAACAATCAGTGAAAATGATATATAATCTCCTTGAAAGATATGAATACATTGATActtgacatgtatttatttccttcacTTTAATAGATACACTAGATATTTTGATTCTAATTTGAATCTTGCCATATCAAACTTTCCTCTTGAAGCAAGATGTTACTCTTTGTAAGATGACTGCATTTATTCCCCACAGCATGGCACTTCTTAGTCCTAGTGCTACAATTCAAGGGATTGTAGAATTTAGGACCATTATTGCAGTTTCTCAGCATTGTACCCAACACAATAgattgtatgtatacatttaaacataaaacatgaacGAAAACCATTGTCAACACACAGAAGGTGCCCAGATTAACAAAAGTATCTATCAATTTACAATAGTCATGCTCAACAGCTTAATGGCAAATGCAGTCAATGTTtccaaataaaccatttatttactTCTTATCTATTATGTAACTCAGTGATTTTAATCTGGGTctacttcaaaataaatctattttttggggggaggtcaatttaaaataaggaaTTGGTACTTGGTATTGCAAATCCTTTTCTTCAAGGATTTAGCCGAGTCTTCCAGCCGTACATTTTGGATCATCGGTCCAGATTCAGTCAGGTTTTCTGCTGTGATTTAAGTGTTGATTATATCTTCAGAGGCACCATGGAAGGATGAAGTCACAGTTGTTTGCACTATTTTTCCCAGAACTGATGATCGAGATCAGTGTTTCGTATATAAATTGTTACTCTGAAACAATCAAAtgctgcttgtttgtgtttctaattTAGATATCCTAAGTGGTTTAAGCTGCAGTAATCAACTccttgtgtacaaactgcaGCTTTCCCAGTGCAAAGAATGAGGAACCCCCTTCCACCGAGATGGCTTATTTTGGGGATAGGGGTATTCATTGTTTAGTTTCTCAAAGGCTTACTCGTGAAAGCTAATACCAACGCAGGAAGACGCCCTCTGTAGCTCTACTGCATTTGGTGtgcttatgttttatttagcaGCCCCACCCTCTCCCCACCCCCATACATTGTTAAAGCATGTTTACTGTGTTCTATTCAGCCAAGCTTTTAAAGCTTAAGGCTGGAGGTACACAAGCAAAATCTCCTGTCAGTTGTAGCTGgcatcacaaaaacaaatatctctGAATTGCTGTTTCTAAATGTGCTACATGCACCTTGAATCACCTTGAGTTATTTTCAAAGGATTCTGGAGTGGATTTCACTTAGTTCAACTAAGTAAGTGCCttagaataaaaaagaaatacaaaaatacaaaatgagaaaaaggaataaaaatacaaatttgcacCTTGAATTTTGACCATTTCTCTTCAAGCACAAAATCTACAACAAGGTTTTTcttagattgtttttttttactattatatTGTTCAAAGAACTTTTGTagcaattttgttttgcttttaaacaaaGCCAAATTCtaattgtgatatatttatataacatctTTAATGTGTAGACATGAAATTACATCATTAATTTCTGCTAATGTAGAAGGACTCCTTCTTGTGTATGTGCacttgtatatttgttttgtttgttgttttctggaaTATAGATCGTACGtaatatattattcataataaagaTTTTCTTGTTAA

Function

symbol description
lrrc58 Orthologous to human LRRC58 (leucine rich repeat containing 58).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 58-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014725 True 4198 mRNA 0.40 4 28767435 28779290

Neighbor

gene id symbol gene type direction distance location
AMCG00014726 LOC103028151 coding upstream 1345 28695811 ~ 28766090 (+)
AMCG00014723 NA coding upstream 158248 28591078 ~ 28609187 (+)
AMCG00014724 NA coding upstream 176475 28583469 ~ 28590960 (+)
AMCG00014720 NA coding upstream 283585 28456195 ~ 28483850 (+)
AMCG00014722 NA coding upstream 317328 28444976 ~ 28450107 (+)
AMCG00014727 gsk3b,LOC107703010 coding downstream 102627 28881917 ~ 28890968 (+)
AMCG00014728 gsk3b,LOC107559500,LOC107721573,LOC107551994,LOC107715908 coding downstream 126611 28905901 ~ 28916634 (+)
AMCG00014734 NA coding downstream 316839 29096129 ~ 29110638 (+)
AMCG00014733 NA coding downstream 341661 29120951 ~ 29129042 (+)
AMCG00014737 NA coding downstream 528650 29307940 ~ 29321592 (+)
G72273 NA non-coding upstream 188702 28526788 ~ 28578733 (+)
G72208 NA non-coding upstream 425718 28337291 ~ 28341717 (+)
G72173 NA non-coding upstream 466622 28297669 ~ 28300813 (+)
G72169 NA non-coding upstream 469951 28240566 ~ 28297484 (+)
G72072 NA non-coding upstream 1287991 27475064 ~ 27479444 (+)
G72329 NA non-coding downstream 52466 28831756 ~ 28831975 (+)
G72341 NA non-coding downstream 139686 28918976 ~ 28921290 (+)
G72353 NA non-coding downstream 201832 28981122 ~ 28985576 (+)
G72354 NA non-coding downstream 210317 28989607 ~ 28991299 (+)
G72409 NA non-coding downstream 357839 29137129 ~ 29137353 (+)
G72175 LOC102776245 other upstream 463362 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 887635 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 925564 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 1856198 26904877 ~ 26911237 (+)
G71525 NA other upstream 5911789 22855342 ~ 22855646 (+)
AMCG00014729 NA other downstream 17759 28797049 ~ 28837910 (+)
AMCG00014739 NA other downstream 468585 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 489039 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 1064177 29843467 ~ 29846586 (+)
G72605 NA other downstream 1072160 29851450 ~ 29851821 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037656 lrrc58b coding NC_007120.7 CM002893.2 9719225 ~ 9732212 (-)