AMCG00014733


Basic Information

Item Value
gene id AMCG00014733
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29120951 ~ 29129042 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014733
CAAAGATATAACACCTTGGTGCACTTGATCACTACCAGTACAGGAGCAGACATTAGAATATGGACTTCTTTTCCAGAAACCAGTAGACTTTACCTcggtaaaaataaatgtaaataaatgtttttgcagGCTAATAGTATGCGAGGGAATGCGTTCACTGTGGGGGtccttctgcttctgcttctgtgggatgttcaaaCTCAAGAATTCCTTTATAAAGAGCTCCAGGTAGGGAATAATGTTTCTTTCAACTGCTCCAACAAAACATTTGATCCAGTGTTGTATGAAAACTGGAAGATAAACAGGACAAGTGGGAGTAAATGTATGGTGGTTTTACGATTtgataacaacaatacaaacagcACTTGTGACGACCCTCGGATAACAATTCAGAGAGTGGGTGACAGATCCGTCCTCCATATAGCACGCTTTGAACACACTGATGCAGGGGATTACTCCTGTGAGACAGTTTACACTGGTGGAACGGATTTTCTGCACTTTAAAGTAATTGCTGTGGtcaACAACACCATTGAAGATGATAGGGatcaaactgcattatatataattttattggGCATTACTGGTTTGATAACAGTTTCTTTGGTGATATCTGTTATTTTCATGAGGAATCTAAATGCTCAAAAAAGCCGCCATAACCAAACATTGGACCCCACAGCTTTTGGATTCAACAGAGGAGAGGAACTACAAGACTGTGAACCATATTCCATATACATAGAAAAGAAGAATGCAATCTATGACTATTAAATAAAGGTGATGTGTGTTGCCCAATACAAACTGACAAGGAGAGAATGCAAATCACATGCAACACTTTTCTATTACCTGTGGAAAATGTAGACTTGGGAAATTATTCTatatctgtaattaaatatagGGAGAGGGacgggttttttttttaaatcttaccAACAAAGTTCACGTATGCTACATTTTTGTtacacatttgtataatttaaatgtcatgaGTCTGTCCTCTGCAAATGTTGCTTCTTGTGGTTAATTTGTTCTCATTGTATCACACATCAGTAGCATTGTGCAGATACTGAACTTTCCAGATTAGGGTTCATGAATGATGTTGCACCAGACACATGAACTTTGGTGCTTCTGTCTGCATTCTCCggctttttttgttattgtttgaaAACCTGAGACCTTGAGCTGCCGTGCATTACATTGCAACTGACAGTTATTATTTGTGTCAGAAGTATCTGTGGTTATTAAGTTATCTCTGACGAAAGACATGTCTAGCAAACAGTCTTTGCATCAAGTTCATCATACAAATTAATACTGAGCAAGTGTTGTGCTATCTAATAATTAAAGGTTACAGTTATTCTGTTAAAccatgtttttgtatgttttattttaccagtGTGTTGACAAAAATGCATTAACGCATTGTTAATAAAG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014733 True 1425 mRNA 0.37 6 29120951 29129042

Neighbor

gene id symbol gene type direction distance location
AMCG00014734 NA coding upstream 10313 29096129 ~ 29110638 (+)
AMCG00014728 gsk3b,LOC107559500,LOC107721573,LOC107551994,LOC107715908 coding upstream 204317 28905901 ~ 28916634 (+)
AMCG00014727 gsk3b,LOC107703010 coding upstream 229983 28881917 ~ 28890968 (+)
AMCG00014725 lrrc58,LOC106574305 coding upstream 341661 28767435 ~ 28779290 (+)
AMCG00014726 LOC103028151 coding upstream 354861 28695811 ~ 28766090 (+)
AMCG00014737 NA coding downstream 178898 29307940 ~ 29321592 (+)
AMCG00014741 LOC106586690,LOC106582147,LOC106575755 coding downstream 254446 29383488 ~ 29398221 (+)
AMCG00014740 LOC107557921 coding downstream 271590 29400632 ~ 29421379 (+)
AMCG00014736 cryaa coding downstream 302479 29431521 ~ 29437107 (+)
AMCG00014743 NA coding downstream 411489 29540531 ~ 29558701 (+)
G72354 NA non-coding upstream 129652 28989607 ~ 28991299 (+)
G72353 NA non-coding upstream 135375 28981122 ~ 28985576 (+)
G72341 NA non-coding upstream 199661 28918976 ~ 28921290 (+)
G72329 NA non-coding upstream 288976 28831756 ~ 28831975 (+)
G72273 NA non-coding upstream 542218 28526788 ~ 28578733 (+)
G72409 NA non-coding downstream 8087 29137129 ~ 29137353 (+)
G72415 NA non-coding downstream 27983 29157025 ~ 29160425 (+)
G72426 NA non-coding downstream 62929 29191971 ~ 29192278 (+)
G72767 NA non-coding downstream 1707794 30836836 ~ 30837169 (+)
G72768 NA non-coding downstream 1712518 30841560 ~ 30844670 (+)
AMCG00014729 NA other upstream 283041 28797049 ~ 28837910 (+)
G72175 LOC102776245 other upstream 816878 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 1241151 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 1279080 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 2209714 26904877 ~ 26911237 (+)
AMCG00014739 NA other downstream 118833 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 139287 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 714425 29843467 ~ 29846586 (+)
G72605 NA other downstream 722408 29851450 ~ 29851821 (+)
AMCG00014777 NA other downstream 1635309 30764351 ~ 30812287 (+)

Expression


Co-expression Network