AMCG00014734


Basic Information

Item Value
gene id AMCG00014734
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29096129 ~ 29110638 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014734
GAAATGAATGAGTGTCAACACGTTATCTGTGAGACATATTTGACAGTGTCCCACTAGAACAAGGGTGCTCTGTCTAAATATAGGACAGTGTGGATGAACAGAGATACTTTGGAAGAATTGAGTGAACATAGGGCTTCAGGACTGGGAAAGAGATGGGAGAGCTATGGgtctttcatgttttatgtCTTCTGGCTTTTACTGTCAGTTTGACTGCGAGTGAAGAACACACGTCTAATGGTTCACATGTTATTGAGGGAACCACATTGGCAACAAGCACAACTTCTAAGGCTTTGTTCAAAactgACCACAGGAATGAGGTATTTGACCAGAAACAAATGGTGGAGCTCATGTGCACAAATAAGACATGGGAAAAGATTTTCTACACCAtttggaaaattacaaaaagaaacagaccTGAGTGCACAGTAGGAACAGCTCCTGACAAAGTCAAAGTTAACACTTGTGAGGATGGAAAACAGCTACAAACCACAGCAAGTGGAGTACCTCTGCTGCACATTCCCCAGTTTCAATACAGCGATGAGGGGATCTACAAATGTGAGGTTGTTTATGATGGAGGAGAACACACAGTAGAAATCAACATATCTGCTAGAGTCCCCCCGCAGGTAACCGCAAGATTTGTCCGTGCACATATGGTGGCTGTATGTAAGGCTGCAAATAGTAAACCACCTGCAAATGTTTCATGGAGTGGATTAAGGAACTGGACACAGAACACCATCATGAACCCAAACGGCACCTATACTGTGGAAAGCTTGGCTACAGTGCCTGACAACACAAGCATAGAGAATGTCACCTGCATTGTTGCACATCCATTGTGGGAAAAACCTATCAGTTATACCCCAGAAGAAGAGAGTAGAAACTGTTGCAAGTCCAACATTGCCACACCACCAACTACCACCACCAAAATACAGGATGTGGATGAACTGGAGCCCTATGCAAGTTACGTTGAAAGAGTGAATTCCATCTACAATTCATCGGCGGAGCTCTGCAATGCCTAAACCTGTTTCTGATATCAGCAAGTAGCGAATTAACTGCTCAAGATGTCCAACTGAGATCTCTCTCCGGGGCAGCATGAAATGAAATTGACAGTGTGGAGGAGATCTTCAGCAACAGTCattcagaaagagaaagatgaCTCTAACTTGCACaagacaattatttattatgctgcCCAGCTGCAGTAAAGGCCATGTTGTACTGGTCTGACCTCAATCATTTTTTAGCACTTGCAAACAGTCCAATCCTCACATCTCTATAAGGTCTTGACTACATATACTTCACATTCACCCTGGTTTTTCTTTCCTCCATGGAAAAAGACCTCCCTCCCCTCAAAAAAAGGCTCCTATTTTGAAAGTATCCATCATGACCTAACACGTCGGACAGACAAACAATAGACATTATTCGATGGTGTCAAGATAAGAGATTTTGATGTTTCAccaaaggggaggggggtgtcgAAGAACTTTGCATCATCTTATTCGTCCATTTCAACCATCGTCCAGGCAAGAGTCAAAATCCGCCCTTTTTGAGAAATTATCCGCTATGTGACTTCGGAGAGCCCTAGGACAAATGGTGCTCTTTTTCCAGACAGTGGTATTGCGAAATGACAAAGCACCCAAATAGAAGTGTCTTGTGAGAGACACCAAGCTACTTGGGGTTTACTCATGGCACATTGTTCCCAATTCTCGAGAGGTGTAATTGGAGAGTGAGTCATCCCTTTTCATTCCGTTGACACTGCAGGAAGTACCCAGTTGCCATTTCCTCTGTCACAAAGATAAAAAACTGTCTGGCACTCTGCTCTCGCTACAGACACTCTGAGTTGTTTACATTTGGCCTACCCTTTGATGAAGACTCTGAATGGCATCCTCAGAAACACAACCGAGACCTATTGTGTTCTGAATGTGCACCATGGACTGgattttggtttctttattgtttcttcttcttttcattgTTAGTTTGTTAAGCAGTGGATTCATTACAATTTGGGAGAGTGTGCAatctaaatgttttcctttgaagAAGTCTTGGCACACATTCTCTGTACATCAAAAGTCAATTCTGAAATGGCAGTCATCGAACTACTGTGTGTACCATGTTCTGTCAGaggaaattatgtaaattatgtttaatatacattacCAACCcacttcattttgtttgtttgtttgcttgttttatagatatatagatatccAGAGCCCACA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko05330 Allograft rejection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014734 True 2225 mRNA 0.42 6 29096129 29110638

Neighbor

gene id symbol gene type direction distance location
AMCG00014728 gsk3b,LOC107559500,LOC107721573,LOC107551994,LOC107715908 coding upstream 179495 28905901 ~ 28916634 (+)
AMCG00014727 gsk3b,LOC107703010 coding upstream 205161 28881917 ~ 28890968 (+)
AMCG00014725 lrrc58,LOC106574305 coding upstream 316839 28767435 ~ 28779290 (+)
AMCG00014726 LOC103028151 coding upstream 330039 28695811 ~ 28766090 (+)
AMCG00014723 NA coding upstream 486942 28591078 ~ 28609187 (+)
AMCG00014733 NA coding downstream 10313 29120951 ~ 29129042 (+)
AMCG00014737 NA coding downstream 197302 29307940 ~ 29321592 (+)
AMCG00014741 LOC106586690,LOC106582147,LOC106575755 coding downstream 272850 29383488 ~ 29398221 (+)
AMCG00014740 LOC107557921 coding downstream 289994 29400632 ~ 29421379 (+)
AMCG00014736 cryaa coding downstream 320883 29431521 ~ 29437107 (+)
G72354 NA non-coding upstream 104830 28989607 ~ 28991299 (+)
G72353 NA non-coding upstream 110553 28981122 ~ 28985576 (+)
G72341 NA non-coding upstream 174839 28918976 ~ 28921290 (+)
G72329 NA non-coding upstream 264154 28831756 ~ 28831975 (+)
G72273 NA non-coding upstream 517396 28526788 ~ 28578733 (+)
G72409 NA non-coding downstream 26491 29137129 ~ 29137353 (+)
G72415 NA non-coding downstream 46387 29157025 ~ 29160425 (+)
G72426 NA non-coding downstream 81333 29191971 ~ 29192278 (+)
G72767 NA non-coding downstream 1726198 30836836 ~ 30837169 (+)
G72768 NA non-coding downstream 1730922 30841560 ~ 30844670 (+)
AMCG00014729 NA other upstream 258219 28797049 ~ 28837910 (+)
G72175 LOC102776245 other upstream 792056 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 1216329 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 1254258 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 2184892 26904877 ~ 26911237 (+)
AMCG00014739 NA other downstream 137237 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 157691 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 732829 29843467 ~ 29846586 (+)
G72605 NA other downstream 740812 29851450 ~ 29851821 (+)
AMCG00014777 NA other downstream 1653713 30764351 ~ 30812287 (+)

Expression


Co-expression Network