AMCG00014739


Basic Information

Item Value
gene id AMCG00014739
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29247875 ~ 29256354 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014739
GCTGGGCAAGGGTAACAAGCAGGCAGgtagaaaacagaaagaaagcaaaaaggACCTGCAGCTatggattgtattattttatttttcattggtaTGGTCTGCATACTATCAAAGGGGTGTTTGTCAGCCAATGTAGTGGCAACTGGGGACTCTAAAGTGGCTTTAAATGGAACCGCATCTTTCTCCTGCACTCTCCCGGAGGCGGATGGAGTATTACAAGTCACCTGGCAGAAGATGTATGCAGACAAGTCCATAGAGAGCGTGGCGACCTACAGTAAACGATTTGGAGCCAAAGTCCTGTCCCCCTATCAAGACAGAATTAATTTCACCAAATCAGACCTGAACACGTCATCAATAACCATTCAGAATGTCCGATTCGAAGATGCGGCTATCTACATCTGTTCCTTTAATGCCTACCCAGAAGGGTCCACAAGAGGGCAATTATCTCTTAGCGTGTATGGCATATCTGAAGTGACAGCTGTAACGCACCATGTGCCGAGCGTCGGGACTTCTTCGCAAAAGGTTGTTGTCATCTGCGCAGCCACGGGTTTGCCAGCCCCGCAGGTGAAATGGAGCAGCACAGCAGGCGCAGTGCTTACAGGACAGGAAAGGGTGCAGAGAGTGAACGGGATCTACACTGTGACCAGCAACCTCACCGTGGACACCTCCGAACTGGCAGACAAATATGTGGACTGTGTGGTCAGCAACTCCGACCTGAAAGAGCCCATTTCCCAGCGCGTCAGCCTGGAGCAAATGGCAAGAACAACACCTGAGCAACCCTCATCGAAGGACTCATCTTTTTCTATCATGGCTGTCTCTATTGGGGTGGTCATACTGGTCACGGTTGCCATCTGTCTTCTGCTTTGGatcaaaaagaaacacagagacCTCATAATGACTCAGCGAATTGTCACTGCAACGATTTGGGACAACGTCACCTTGAAGTGCGAGCTGACAAAGTCCAAAGATGTCCTGCAGGTTACATGGCAGAAGCAGAATGGACAGTCAGCTGAAAACATCGCCACTTATAATAATCGCTTTGGAGCGAAAGTCTCTGACTCTTACAGGGAACGTGTGAGTTTTGTTGTCAAGGGATTACATGAATCTTCAATAGCCATCAGAGGAGTTTCTAGAGAAGACGAGGCTTGCTACAACTGTTTATTTAACTCGTATCCTGAAGGGGCCATCAAAGGGATTACCTGCATTGCTACGGTCTACGAGCTACATGAGCCCCTTTTTGAAGTGAGCACAATGCCTGCCCATGGCAGTGAACACAGAGTCTATCTGCTGACCTGCTCCGTCACTGGCAGACCGGTTCCCACCGTGTCCTGGAGTACTGAGAGACACGATGTCATAGAGGATTCTCAGCAGTTCACTGTCACCAACCCCAATGGCACCGTTACTGTGGTTATAAATGCCACGATCAATGTGTCCAGACTGACTGACAAGGAAACACTAATAAAGTGCACAGTACATAACTCAGCTTTTGGAAGGGAAAAGGAGATTTCC
>TU90536
CGGAAATTCCTGTCATCTGACTACTGTGCTGTACAGTTCGGTGTTCATTTCATCTCTCTTGTTCACAGGCATATCTGAAGTGACAGCTGTAACGCACCATGTGCCGAGCGTCGGGACTTCTTCGCAAAAGGTTGTTGTCATCTGCGCAGCCACGGGTTTGCCAGCCCCGCAGGTGAAATGGAGCAGCACAGCAGGCGCAGTGCTTACAGGACAGGAAAGGGTGCAGAGAGTGAACGGGATCTACACTGTGACCAGCAACCTCACCGTGGACACCTCCGAACTGGCAGACAAATATGTGGACTGTGTGGTCAGCAACTCCGACCTGAAAGAGCCCATTTCCCAGCGCGTCAGCCTGGAGCAAATGGCAAGAACAACACCTGAGCCCACAGAACCCTCATCGAAGGACTCATCTTTTTCTATCATGGCTGTCTCTATTGGGGTGGTCATACTGGTCACGGTTGCCATCTGTCTTCTGCTTTGGatcaaaaagaaacacagagATGCATGTACAGAATTAAGAAACAGGACTGGGACGATTGGGGAGAgctgctgttttgttgtgtgctCACATGAAACAGAAGCACAACATCAAAACAGTATTCTATGATCTGAGTGGATGCCTTTGCTATAAGCGGTCAGAGGCTATTAAccatggaagaaaaacaacaacattaaaacaaactcgCTTTGAGCAAACACTCCAAACATCTTTGCCACTGAACAAACATTGTCTGCGCTCCGGTACAATACACTTTGGGACTGGATTCCTCTTGCAGCAAGCTGTGATGTCAAGTACCTTCAGGACACAACTTCTCCAAACAGTTCGGTTGCCGCAGCGCTTTAATGgttaaaatttgtttttgtttgctttttcatgaAGCTACAGATACGTTTCataattatgaatgtgttttttagttgtttttttcggTTACAATTTACTTGTTTCtgacataaagaaaaaaaagtatcctACAAGCATTTTCTTTTGGGTCATTTCCCCCCCCATTGGAATCAACATATTGTGTTCGTTATCTTCCCATACACATGTATGTgggtttacattaaaaaagtgtcCATAAAGCTGGTTCAGGGGAATATTTGTGTCTTTAAATTCAGAATGTAGCAAAGGATTGGGGTTGGTCTGGGGCAGTATCATTGTTTAAGCTGTGAATAAGCTAGAGGTCCAAACCAGGATAAATATCTGTAGGGAACATAGCTACATTTGAATGTGTTCTGTCTATATACAAGTATAGTAGACGGAGATACTGAGCATATATCTAAACTGCACTGTGTTTACATTCTACCTCTTTTTCTATTTGAAGATTGTCTACATCTTGTACTGttgcacttttatttgtatgtgtatttgaaatatgtaattaatgtgggACACAAATGTGCTTGCTGCTTGCAATACGTGAATTCATAACATTATGAGGTATCTTTTAAACAAGTTGGAATTAGAAGAGCTGgataaaaaagaaactgtaaTTACCAATATTCTGTATGTGTGCAATACTCGATATGTGAACAAGTGAATATTAACATGAATATATACAGCTGATATAAAATTATGCATCTGCTTTTTGTAACCCTTGGTTTCGGTATTAAAACAGTTTCTTCTGTGGATTACCCTTGCTTACACTAACCTTGgcaatatatgcatttttctgTCAATTATTTATAGTAACTCTAGGCTTTTCTCTGACCTGGTATAATGATATACACCTTTATGTATTGCACTATATTGATATGTGTCCCTTATGACTATCAGTCCCAATTTCATATTTGTTGActatcttttcttctttttattttgtttttgtaatgttaacctgttcagaaatgtaaactttttcaatttgcactgttttgtattaaataatttatttttattttaaatgcactttttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014739 False 1509 mRNA 0.48 6 29247875 29256354
TU90536 True 1916 lncRNA 0.39 3 29249246 29252705

Neighbor

gene id symbol gene type direction distance location
AMCG00014733 NA coding upstream 118833 29120951 ~ 29129042 (+)
AMCG00014734 NA coding upstream 137237 29096129 ~ 29110638 (+)
AMCG00014728 gsk3b,LOC107559500,LOC107721573,LOC107551994,LOC107715908 coding upstream 331241 28905901 ~ 28916634 (+)
AMCG00014727 gsk3b,LOC107703010 coding upstream 356907 28881917 ~ 28890968 (+)
AMCG00014725 lrrc58,LOC106574305 coding upstream 468585 28767435 ~ 28779290 (+)
AMCG00014737 NA coding downstream 51586 29307940 ~ 29321592 (+)
AMCG00014741 LOC106586690,LOC106582147,LOC106575755 coding downstream 127134 29383488 ~ 29398221 (+)
AMCG00014740 LOC107557921 coding downstream 144278 29400632 ~ 29421379 (+)
AMCG00014736 cryaa coding downstream 175167 29431521 ~ 29437107 (+)
AMCG00014743 NA coding downstream 284177 29540531 ~ 29558701 (+)
G72426 NA non-coding upstream 55597 29191971 ~ 29192278 (+)
G72415 NA non-coding upstream 87450 29157025 ~ 29160425 (+)
G72409 NA non-coding upstream 110522 29137129 ~ 29137353 (+)
G72354 NA non-coding upstream 256576 28989607 ~ 28991299 (+)
G72353 NA non-coding upstream 262299 28981122 ~ 28985576 (+)
G72767 NA non-coding downstream 1580482 30836836 ~ 30837169 (+)
G72768 NA non-coding downstream 1585206 30841560 ~ 30844670 (+)
G72769 NA non-coding downstream 1589808 30846162 ~ 30846421 (+)
G72783 NA non-coding downstream 1699551 30955905 ~ 30956284 (+)
G72789 NA non-coding downstream 1747018 31003372 ~ 31003788 (+)
AMCG00014729 NA other upstream 409965 28797049 ~ 28837910 (+)
G72175 LOC102776245 other upstream 943802 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 1368075 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 1406004 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 2336638 26904877 ~ 26911237 (+)
AMCG00014738 NA other downstream 11975 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 587113 29843467 ~ 29846586 (+)
G72605 NA other downstream 595096 29851450 ~ 29851821 (+)
AMCG00014777 NA other downstream 1507997 30764351 ~ 30812287 (+)
G72785 fam160a2 other downstream 1721862 30978216 ~ 30978825 (+)

Expression


Co-expression Network