AMCG00014824


Basic Information

Item Value
gene id AMCG00014824
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32795005 ~ 32806295 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014824
TCGAAAGCATGGGAAGTGTTTTGAATTTGCAGAGGGTGTAATGGAGTCATTGCATATAAGaaaaaaaacaaaatgatactCCACAGATTGCTCAACAGCAGAGGGTGGCCCACAATACCCAAGGCTGGGTATGCGAGAGTCTCCCAGCGCCGTGCCCACACCCTGGCTTCCATTCTCCAGACCCCGGAGATGCCTGAAAAGAAGCTCAGAGGCCTGGTCTTCCCTTTCAGCGAGCTCGAGAATCACCTCTCAAGCCGAGTGAACAAGACAAACTTCCAGTTATTCTGGCCCAGTCTGGAGGACGTTAAAAGGGCAGAGGCACTCTTTTCCCCTTCCAGAAAACACAAGATTGATTACTTCACATCAGCTGTAAGAATGGATCACGCTCCATTAATAACTCAACCAGAGGTGTGCTTTATTGGCAGAAGTAATGTTGGGAAATCATCTTTAGTAAAAGCATTGTTTGCCTTGGTCCCAGATGTGGAAGTCAGGATTTCCAAAACGCCAGGGCACACCAAGAAAATGAACTTCTTTTCTGTTGGCAAAGTTTTCACTCTAGTGGACATGCCTGGTTATGGACATAAGGCCCCCAAAGATTTTGTCAATATGATGGTGGTGACCAAGATTGACAAGGGCAGTCGAGGGGAGCTGCTGAAGCGAGTCCTGGAGATGCAGGCCATCATCCAGAGACAAACAGCGGGATGTTTTCCTCAGCCTTTTTTAGTAAGTTCAACACACTATTCTGGGATACATCTTCTCCGGTGTTTCATTGCCCATGTGACTGGAAACCTCCAGCTGGCGTCTGATTCAGAGAGGAAGGCTACAGATATGTGCTGAGTGTGTACAAGTCTCGTACTCTCTCTGTTGTTTTAGGTATGCATATTCTTATGTGATTTTGCTCTCAAAACcactatatttattaattgaatcataataaaaaaa
>TU91480
GGTCGAAAGCATGGGAAGTGTTTTGAATTTGCAGAGGGTGTAATGGAGTCATTGCATATAAGaaaaaaaacaaaatgatactCCACAGATTGCTCAACAGCAGAGGGTGGCCCACAATACCCAAGGCTGGGTATGCGAGAGTCTCCCAGCGCCGTGCCCACACCCTGGCTTCCATTCTCCAGACCCCGGAGATGCCTGAAAAGAAGCTCAGAGGCCTGGTCTTCCCTTTCAGCGAGCTCGAGAATCACCTCTCAAGCCGAGTGAACAAGACAAACTTCCAGTTATTCTGGCCCAGTCTGGAGGACGTTAAAAGGGCAGAGGCACTCTTTTCCCCTTCCAGAAAACACAAGATTGATTACTTCACATCAGCTGTAAGAATGGATCACGCTCCATTAATAACTCAACCAGAGGtcagtggaagaaaaaaaaatatcttaaactCAAGTAATAGCTCTGGACTCTCATGCATAAGATAGTGGGTAATTAATTGTGTCTGGTAATGTGACTgcttttaaggaaaaaaaatattctctgCTTGCATTTATTACAGAGTATGACTTTGTTGGTTCCAAATGAAAATTGAATGGTTTTTATATAACTGATGTTCTTCAGACTCAATAAGATTTAATTTTTCAGCTGTTAGTTGTTGTTAATGTATGCTTGGCCTGCAGTTGGTATACTTACCCCTTCTGCAATTTCCACTGTAGTCATTTCCAGTTTCTCAAGCAGCAAGCCTTGGGAAAAGCAGGAGAGGAATCGGACAGTGTCACTATTAAGgcatgtttccttttctttttaaataaaaaaaagtcgtAGGATCTTATGGTTATTACGGTACAAAGCAGCACCCTTAAGGCagtgctaaaaaaaatatttggcagaataaaaacttgtttttgtgttttagtttggtcatgtgttttttttttgtattatctcACTTCTCGTCTTGgttcatgtttcttttctttattataaatactgtatatttaaagaaaattgtgCCAGCTGTACAAAACCAGTGAAAACCATAAAGCTCAGTCATCTGTGAAAATGTACCCCTGCTGGAATTCTGTCCAATTTTGTAACTACAGCCTCCAGCCAGGAAAAGACTTGGTGTTTGAAGTTGCAactatcagtatcagtatcaaaTGGATCATAATTGTGAGGGAGAGTCACCAGTTATGTTCCTTAATTGTGACAGCTTCAGATGACtatactactatatatatatatatatatattgtggtgaAAGCATTTGTGGTGTCTTAAGGGTTTTGTTTCTTCAGTAATGAATATGTAGAATTGACAACTGAGAATGACttacatgttttcattaaaggAGCACTATTTCtttacaatgcaataatgaaccaTTTAGAGAACTTAAGTAGTCACACAGGTAGTCAGTACATAAGAACACATTAacactgtatttttgctttcTAAGTTTTCTAAGCGATGCTGCCCATCTCCCCTCACTTATGGTTACTGCCAGTGTGTTCCTGATTCAGCAGCGACTTCAAATGCCAGGTCTGTTCCAGGCTGGAGCTGGTTTGAAAGCAGCACAGCATTGATTGTACTGTTCCAGCAGGAAGTGGAGAATATACATATTATCAGCTGTCTCAATGGTGTTCTGCTTAGCAGGGTTTTCTTGTACTGGTGATTTAATCCCCCTGCCTGAAAAGgataatttattattaacagGCATTCCTGGTGGAAAGAGCACTAGGTACTCATTAAACCTTAAAACCCTATATTGACTTTTGGAGATTAAAGAATTGCAATGCTACCAACTAACTGCGCTGTTAGATCACTTCATAAGAGCCTGTTGGATTTGACATCTCCCTGTAAATTACGTGTTGATCGTGACAAACAAGCAAGTACAATTGCAAACTGTCAGTGAGAAAAAATCCCTACTGTATTCCTCAGATGCATTATACTGAGTGTATATCAAACCAGGGTCACAATAGAAAAAAGCTAAAAGATGTGGCTATGGCTGTCTGCTAGTATCAGCAGTGTAGAAAAACAATTTTGAATCATTGCGATGGCCTTGATTTTAAGTGCCTGTTTGCCAATGTGGTCTTGTAGAAAGCCTTGTACAAATAGTGTGAAGTGTTACTGACTGGAGAGATTGATACCCCTGCACTTGCCTTCCAATACCTTGGGTTGTACAGATTACACAGACTGATTTCTGATAGAAGATCTGACATAAGAAGGCACAGATAATGTGGCTATATAGAATTTTCTCCCACCAAAAAGATATAAAAGGgcctacttaaaaataaacacatgtatgcataccgatcagccatatcattatgaccactgacaggtgaagtgaataacactgataatctcattatcatggcacctgtcagtgggtgggaaaTATTatgcagcaagtgaacattttgtcctcaaagcaggaaaaatgggcaagcgtaaggatccgagcgactttgacaagggccagattgtgatgactagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcagtgaaccggtgatagggtcatgggcggccaaggctcattgatgcacgtggtcCGATcctgagctactgtagctcaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgtgtatggggttgtgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagcgcctacaatgggcacgtgagcatcagaactggaccacggagcaatgtaggaaggtggcctggtctgatgaatcacgagttcaaggtgttgacttggcctccaagttccccagatctcaatccaattgagtccgatccatggaagccccacctcgcaacttacaggacttaaaggatctgctgctaatgtcttggtgccagataccacagcacaccttcagaggtctagtggagtccatgcctcgactgGTCAAGGCTGTTGACTTTTGCCGGCAAATGAGTCCTTTTATCCCCGTTaaatagcacttcacagagttttatcatgcttcttgcgttattgattgatttcttccttgctccctttccggTAGCCCtcgactgtgaccctacattttgacagcacttagcttttactttccaggatgtatga

Function

GO:

id name namespace
GO:0044249 cellular biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014824 False 942 mRNA 0.45 6 32795005 32806293
TU91480 True 3231 TUCP 0.42 2 32801858 32806295

Neighbor

gene id symbol gene type direction distance location
AMCG00014823 slc10a2 coding downstream 1580 32791881 ~ 32793425 (-)
AMCG00014818 NA coding downstream 141585 32650176 ~ 32653420 (-)
AMCG00014819 NA coding downstream 146010 32647534 ~ 32648995 (-)
AMCG00014820 NA coding downstream 153073 32628832 ~ 32641932 (-)
AMCG00014814 NA coding downstream 472246 32321974 ~ 32322759 (-)
AMCG00014826 NA coding upstream 321383 33127678 ~ 33434382 (-)
AMCG00014828 NA coding upstream 1758191 34564486 ~ 34565202 (-)
AMCG00014829 efnb2a coding upstream 2104298 34910593 ~ 34931646 (-)
AMCG00014830 arglu1,LOC106586866 coding upstream 2136680 34942975 ~ 34960249 (-)
AMCG00014832 NA coding upstream 2366574 35172869 ~ 35180639 (-)
G73187 NA non-coding downstream 4607 32789023 ~ 32790398 (-)
G73184 NA non-coding downstream 83302 32711247 ~ 32711703 (-)
G73183 NA non-coding downstream 83960 32710797 ~ 32711045 (-)
G73182 NA non-coding downstream 84890 32709844 ~ 32710115 (-)
G73181 NA non-coding downstream 86722 32708013 ~ 32708283 (-)
G73232 NA non-coding upstream 441042 33247337 ~ 33247621 (-)
G73242 NA non-coding upstream 513130 33319425 ~ 33319625 (-)
G73245 NA non-coding upstream 559413 33365708 ~ 33366083 (-)
G73259 NA non-coding upstream 839638 33645933 ~ 33702805 (-)
G73260 NA non-coding upstream 972698 33778993 ~ 33779193 (-)
G73127 NA other downstream 175856 32597462 ~ 32619149 (-)
AMCG00014816 NA other downstream 239060 32455306 ~ 32555945 (-)
G73047 NA other downstream 531578 32263167 ~ 32263427 (-)
AMCG00014775 NA other downstream 1948205 30841523 ~ 30846800 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other downstream 3396700 29389290 ~ 29398305 (-)
AMCG00014825 NA other upstream 263954 33070249 ~ 33119328 (-)
G73328 LOC101154678 other upstream 1963288 34769583 ~ 34769979 (-)
AMCG00014839 tmem50b,LOC101064157,LOC101067980 other upstream 2774331 35580626 ~ 35608677 (-)
G73604 pdxk,LOC106574311,LOC105019670,LOC108428208,LOC107676865 other upstream 3295063 36101358 ~ 36182351 (-)
G73612 NA other upstream 3447479 36253774 ~ 36254187 (-)

Expression


Co-expression Network