AMCG00014832


Basic Information

Item Value
gene id AMCG00014832
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35172869 ~ 35180639 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014832
GACATCACTGCATCTATTTTCATTGCCTGTTTAATTCTTCTTGACAGTTCTTTGGTGAATATGAATCACCATGGACACAATCATTAGgcaattatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgataataaaaataataatttttcattACAGTGTTTGGTAAAGCTGGAAGTCTAACTCATATTCAAACAATCACTGGAATCATCAACCAATCAGCTGTTCTTCCCTGTAGTTACAAGACAGACCAACCTTTTAACTTAACTAAACTACGGATTTACTGGCAAATCTCACACATTGTGTCagtacatgttttcaatcaTGGGCAAGTGGATTTTGAGCACCAGGTCAAGGAGTACGAAAATAGAACTAGCTTTTTCCTGGAGGAATTAACAAATGGCAATTTTTCTCTGAGGATATCTCCAGTGAAAttcaaagacaaatcaaaacCCAATGAGAAGTATGATTTatactttgaaaatgaaaatggggGCATGACTCATCATTGCGCCATTGAATTCCATGTTGCAGCAAGTTTCAATGAAcctgtattaaatatatctgcttGTGAAAATATAGCAGAAGGAATTAAAGCAATATGTACTGCCCAAGGAGGGTATCCGGAACCAAGAGTTAACTGGACTGTGCAGGGGGGCCTACTAGATCCAAAGAAAATCAAGACAAATTTCTCACAAGATCCAAAGAGTGGAGTGATTTTCGTAACCAGTATTGCTGTGATAACCAACATATCAGAACAAGGGACTGTGAGGTGTTCCATAATCAATGAAAAACTGGGAGAGATCAAAACATCACCTACTGAAAAATgtaaCATTGAAAATCACCGCAAAAAACGTGATGTGCCTTCGATCATTGGTGTTGTTTCTGTGCTTTCATTTCTGGGACTTATAGCTTTAATCATATACTGCAAGACAAggACCTCGATGACTGCGATGCAAGAGACAGAACAATCCCCAAATGCAGGAATAGTTGAATTAGTGAACAATCCGGCCATGGAAACTCATGCATTGATGACATGATTCCCAAACTGTGCTAGTCCTTTTTACaaagttaatgaaaaaaaaggaaacaagaaaagaaaacaagataattgtttgctttttagttATTGAAAGGGTGCTTCACATGATTCCAGTTTACCAGTGTAAAGGATACAGGAATATATGTTATCAATATTGGGCCTACTGACAAAGTGGAGCCATTTGGATAGTTTCTCATCTCAGTTTccaaaaaaaaggtaattgagaacagtacatttacatgCTGTTATTTACCTTGAAAAGGGGCAGCATGGAATCAGACTTCAGGGACAATGAAAAGAATGCCAGTGGAGGTATATTAGACACTAGGCATTCTCctctataataaatataatataatgtgacCAGTTGAAGAAAATACCTTACTGAGGAGGTAACGGACTTCAAAAAAAGAACCTCAAAACGCTAGAAAAGCATAAAGAAAGACTTGTTTAGCCTGCCTTGTAGAATGTCAGAGTGGAAAATACCTTGGGGCTGGCAGGGAATTTTACTTGATGAgctgaacagaaacaaacaaaaacaacttttctGGTCAGTTCTTGAAAGCTCAAGTAGCAATTCACTCAAAGTGTAATACTTGAGGATGACAGTTTGTTTGAAAGGCAGAAATCTAATAATATCTATTAATACTGAACACAACTTGTAGTGGAAAAACATTGGTCTCCTACTGACATACTCATATATTAGACATTATTTAATCAGACCTGACTAAACCACTTCAAGCTctactgtgaaatgtaaaattaactcATTGATTAAAAAAGTACTCAGTTCTCAGCATTGTAAGCTAACACCACCCCCTACAGACCTGTACAATATAGCcctgtatatataacaaaaccTGTTCTCTTCTCATAAAAAGTATCAAAATtgcaataatgtatttgattaattaatatataaccaatttgttaatataaaaaaatatatcaaagttCTTCAATTTTCTTGAAACGTTCCAGACAGTCACTCATGGGGCTGTGACTTAGTGAGAGCACTGGTCTGTATCAATGTGtcaatgtgtaaaatgtggaaatgtttatcaatacactttttattattattatttgtgtatgtatattatggAGTCCTGAACTATATGCTGTTTGGACCCTGTAGCCATGGTTTGAATCCTGGCTATGATATAGCCAACAGTGAAAGCCAGGGCTTCCAAAATTTACAGTTTAGAGGGAAACAGTCACCCCTGTGGCttacaatatacattataacatCTTATAATGCAAAATTTAAATATAGGGtattaaagaaagagagaaaaaaatatttaaataactgatgTTGTAATATTGATATTTGTGAATAAGCATGCAATGTTGATGTTtggtatattttcttttcattgtggGATTGAAACCCTCTACATATGGTAAATACCTACCTCTTATTTAAgagtataaatacaaatattttttaaagaaaataaaataaaccctaCTTTTTcccatgtttatatattttctaatatatttttgatattgTAAGGATCCGGGACTGGGGTGGTCATGTGTGGTATGTGtagatgtgttttgtgttcattctGTTATGTTAATGTAACTGTTTAGTTACTTCCggggtcaggggttggcccCCCGCGGGAACACAGGGGGTgccgtgattgggggagccagtcacggggtAAGAACTAATAAAGAGGGGTGCCCTGGTTCCCACGGCATAGTTGCAGTTGTTGTAGAGGTGAGAGAGG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014832 True 2795 mRNA 0.36 4 35172869 35180639

Neighbor

gene id symbol gene type direction distance location
AMCG00014830 arglu1,LOC106586866 coding downstream 212620 34942975 ~ 34960249 (-)
AMCG00014829 efnb2a coding downstream 241223 34910593 ~ 34931646 (-)
AMCG00014828 NA coding downstream 607667 34564486 ~ 34565202 (-)
AMCG00014826 NA coding downstream 1738487 33127678 ~ 33434382 (-)
AMCG00014823 slc10a2 coding downstream 2379444 32791881 ~ 32793425 (-)
AMCG00014838 LOC106600244 coding upstream 454348 35634987 ~ 35688097 (-)
AMCG00014841 NA coding upstream 561895 35742534 ~ 35767390 (-)
AMCG00014842 trappc10,LOC107726887 coding upstream 611709 35792348 ~ 35814438 (-)
AMCG00014840 agpat3,LOC102793782 coding upstream 797567 35978206 ~ 35986568 (-)
AMCG00014843 NA coding upstream 881980 36062619 ~ 36073308 (-)
G73336 NA non-coding downstream 307124 34865525 ~ 34865745 (-)
G73335 NA non-coding downstream 334926 34837633 ~ 34837943 (-)
G73330 NA non-coding downstream 392279 34780122 ~ 34780590 (-)
G73319 NA non-coding downstream 569713 34569550 ~ 34603156 (-)
G73309 NA non-coding downstream 709544 34462489 ~ 34463325 (-)
G73365 NA non-coding upstream 42889 35223528 ~ 35223860 (-)
G73366 NA non-coding upstream 53081 35233720 ~ 35234115 (-)
G73373 NA non-coding upstream 71255 35251894 ~ 35252734 (-)
G73378 NA non-coding upstream 76827 35257466 ~ 35258943 (-)
G73381 NA non-coding upstream 87113 35267752 ~ 35268117 (-)
G73328 LOC101154678 other downstream 402890 34769583 ~ 34769979 (-)
AMCG00014825 NA other downstream 2053541 33070249 ~ 33119328 (-)
AMCG00014824 NA other downstream 2366574 32795005 ~ 32806295 (-)
G73127 NA other downstream 2553720 32597462 ~ 32619149 (-)
AMCG00014816 NA other downstream 2616924 32455306 ~ 32555945 (-)
AMCG00014839 tmem50b,LOC101064157,LOC101067980 other upstream 399987 35580626 ~ 35608677 (-)
G73604 pdxk,LOC106574311,LOC105019670,LOC108428208,LOC107676865 other upstream 920719 36101358 ~ 36182351 (-)
G73612 NA other upstream 1073135 36253774 ~ 36254187 (-)
AMCG00014845 NA other upstream 1192512 36373151 ~ 36393493 (-)
G73833 NA other upstream 2144381 37325020 ~ 37325307 (-)

Expression


Co-expression Network