G68073


Basic Information

Item Value
gene id G68073
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2765190 ~ 2766174 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU85032
GTCGCTTCCGGGTGTCGTGTTGTTTCGTAAGCTTGTCTTCAATGGACGCTCTTTGCCATCTTGTCGCACAGAGATAATCAGAGGCCGCGGCTCATTGACACTGAAACCACAGAGGCGCGCTAGACATGGTCTGACTGCTCATTAAAGcctgCAGCTTCGTGGCCAGGAAGATCGCGGCCTCCATCGCTGACAGAGAGCAGCAGGAGAAGCCCGACCCGGCGCCATGTAGCCAGGCTATAGGTGAGactgctgccccctgctggctCAGACAGACTGTTGCACACCCCCAATAAACCAGAAGAGTCAAAAAGGAAAAGCTCCCAAATGTTGTCAGCCTTTATTTTAACCTTTGTAAGTACAGCCTCTCTAACGGCACTCAGGGCAGCTGGCACAGAGCTGGCCTCGGTGTAATTCTGTGTTGGGCTCCTGATCTGTATCAGAACTGCACAGCGGTGGATAATCTCTGGACAAGTGACAGTCATTTATAAACAGTGAGGCATGTCCTCTGCCCACTCCACAGTGATCCGACtcccttgtgtgtttgtgtcatctCTCCGCAGCTCCGC
>TU85033
GTCGCTTCCGGGTGTCGTGTTGTTTCGTAAGCTTGTCTTCAATGGACGCTCTTTGCCATCTTGTCGCACAGAGATAATCAGAGGCCGCGGCTCATTGACACTGAAACCACAGAGGCGCGCTAGACATGGTCTGACTGCTCATTAAAGcctgCAGCTTCGTGGCCAGGAAGATCGCGGCCTCCATCGCTGACAGAGAGCAGCAGGAGAAGCCCGACCCGGCGCCATGTAGCCAGGCTATAGGTGAGactgctgccccctgctggctCAGACAGACTGTTGCACACCCCCAATAAACCAGAAGAGTCAAAAAGGAAAAGCTCCCAAATGTTGTCAGCCTTTATTTTAACCTTTGTAAGTACAGCCTCTCTAACGGCACTCAGGGCAGCTGGCACAGAGCTGGCCTCGGTGTAATTCTGTGTTGGGCTCCTGATCTGTATCAGAACTGCACAGCGGTGGATAATCTCTGGACAAGTGACTTAGTGGATAAAAGGTGAATAAAGTCACAGGTGCCACTGGGACGGTCACTACAATGGTGTGCGTCAGTCATTTATAAACAGTGAGGCATGTCCTCTGCCCACTCCACAGTGATCCGACtcccttgtgtgtttgtgtcatctCTCCGCAGCTCCGC

Function

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU85032 False 566 lncRNA 0.53 3 2765190 2766174
TU85033 True 631 lncRNA 0.53 2 2765190 2766174

Neighbor

gene id symbol gene type direction distance location
AMCG00014151 NA coding downstream 13195 2745345 ~ 2751995 (-)
AMCG00014150 NA coding downstream 30318 2731531 ~ 2734872 (-)
AMCG00014142 NA coding downstream 89780 2667981 ~ 2675410 (-)
AMCG00014145 NA coding downstream 129874 2631658 ~ 2635316 (-)
AMCG00014143 NA coding downstream 149660 2615255 ~ 2615530 (-)
AMCG00014155 piga,LOC106582142,LOC102779826 coding upstream 84238 2850412 ~ 2868349 (-)
AMCG00014153 NA coding upstream 104287 2870461 ~ 2879884 (-)
AMCG00014156 LOC102310267 coding upstream 114340 2880514 ~ 2892222 (-)
AMCG00014154 NA coding upstream 127680 2893854 ~ 2904687 (-)
AMCG00014157 LOC106595857 coding upstream 164440 2930614 ~ 2935152 (-)
G68070 NA non-coding downstream 6350 2758485 ~ 2758840 (-)
G68061 NA non-coding downstream 54861 2707817 ~ 2710329 (-)
G68057 NA non-coding downstream 64031 2696808 ~ 2701159 (-)
G67953 NA non-coding downstream 156711 2608269 ~ 2608479 (-)
G67911 NA non-coding downstream 391861 2350125 ~ 2373329 (-)
G68076 NA non-coding upstream 3664 2769838 ~ 2770660 (-)
G68077 NA non-coding upstream 10085 2776259 ~ 2805164 (-)
G68078 NA non-coding upstream 16336 2782510 ~ 2802044 (-)
G68124 NA non-coding upstream 262935 3029109 ~ 3032764 (-)
G68162 NA non-coding upstream 460691 3226865 ~ 3228150 (-)
AMCG00014144 NA other downstream 111943 2641059 ~ 2653247 (-)
AMCG00014134 NA other downstream 222493 2531954 ~ 2542697 (-)
AMCG00014119 NA other downstream 640237 2085941 ~ 2124953 (-)
G67843 NA other downstream 847008 1916727 ~ 1918182 (-)
G67832 NA other downstream 862575 1900640 ~ 1902615 (-)
G68088 NA other upstream 59388 2825562 ~ 2829144 (-)
AMCG00014181 ppef1,LOC105893339,LOC108425737,LOC107695075 other upstream 619583 3385757 ~ 3394754 (-)
AMCG00014228 NA other upstream 2892898 5659072 ~ 5678499 (-)
AMCG00014241 NA other upstream 3293315 6059489 ~ 6108358 (-)
AMCG00014271 NA other upstream 4611914 7378088 ~ 7386984 (-)

Expression


Co-expression Network