G68376 (trappc2)


Basic Information

Item Value
gene id G68376
gene name trappc2
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4294817 ~ 4295819 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU85441
TTTAATGTACAAATCGTATACGTCGttgaaaaagtttttgatcccaTCTTCTTGTCTGACATCATGGAGCATAATAAACCTCATATGACCAGCTGTGACGAAGGCGGAGACAAACCACTCATTAAACTTGTCCACTGTCTTCAGGTACATGTTGTTGGACAGCCACATGTTCTCATCCACCAGATCAAGGGCAGCATGGGCGATAAACTGGTTGAGATGCCGATGGTCATCCT

Function

symbol description
trappc2 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in endoplasmic reticulum-Golgi intermediate compartment and perinuclear region of cytoplasm. Predicted to be part of TRAPP complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in X-linked spondyloepiphyseal dysplasia tarda. Orthologous to human TRAPPC2 (trafficking protein particle complex subunit 2).

NR:

description
PREDICTED: trafficking protein particle complex subunit 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85441 True 233 lncRNA 0.44 2 4294817 4295819

Neighbor

gene id symbol gene type direction distance location
AMCG00014201 rab9a,LOC106581920 coding upstream 3268 4290944 ~ 4291549 (+)
AMCG00014200 NA coding upstream 50795 4242810 ~ 4244022 (+)
AMCG00014198 NA coding upstream 67174 4223544 ~ 4227643 (+)
AMCG00014199 NA coding upstream 74693 4205155 ~ 4220124 (+)
AMCG00014197 NA coding upstream 176045 4106184 ~ 4118772 (+)
AMCG00014202 NA coding downstream 2522 4298341 ~ 4316679 (+)
AMCG00014207 LOC108443135,LOC102799111 coding downstream 164956 4460775 ~ 4498956 (+)
AMCG00014209 NA coding downstream 224983 4520802 ~ 4548407 (+)
AMCG00014208 NA coding downstream 272850 4568669 ~ 4583209 (+)
AMCG00014213 anos1,LOC104963477 coding downstream 427835 4723654 ~ 4746002 (+)
G68374 NA non-coding upstream 1291 4293326 ~ 4293526 (+)
G68317 NA non-coding upstream 210853 4083763 ~ 4083964 (+)
G68292 NA non-coding upstream 339552 3954366 ~ 3955265 (+)
G68189 NA non-coding upstream 811168 3410978 ~ 3483649 (+)
G68167 NA non-coding upstream 919028 3375585 ~ 3375789 (+)
G68422 NA non-coding downstream 205045 4500864 ~ 4550002 (+)
G68434 NA non-coding downstream 288655 4584474 ~ 4588428 (+)
G68473 NA non-coding downstream 351891 4647710 ~ 4648213 (+)
G68497 NA non-coding downstream 489507 4785326 ~ 4785601 (+)
G68509 NA non-coding downstream 561210 4857029 ~ 4857230 (+)
AMCG00014196 NA other upstream 163099 4127476 ~ 4131718 (+)
AMCG00014146 NA other upstream 1584488 2706840 ~ 2710329 (+)
G67896 NA other upstream 2164672 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 2392130 1900220 ~ 1902687 (+)
G67801 NA other upstream 2413776 1879091 ~ 1881041 (+)
G68475 NA other downstream 353381 4649200 ~ 4651964 (+)
G68830 NA other downstream 3050376 7346195 ~ 7349467 (+)
G68848 NA other downstream 3117821 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 3168684 7464503 ~ 7482560 (+)
G69406 tgfbrap1,LOC102780916 other downstream 5707239 10003058 ~ 10008648 (+)

Expression


Co-expression Network