G68686 (LOC106586545,LOC106582186)


Basic Information

Item Value
gene id G68686
gene name LOC106586545,LOC106582186
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6204178 ~ 6206576 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU85846
ctgttgttaaattatataatttattcaatGTACAtcacatatttaacataatttatattgacacctcataaataaatagagattTCTGTAGCTGTCTCTCACATAACTAAAAAGCTACTTCTATTGGCacactggaaaacaaatctattgCATTTGATCTGTcacagacaaaaatatacattgtcaTTTACAAACATTTGTCACAAATACTTGCCTGTCTAGCAACAGGGCTGACGATGATTTTTGGCTACTATACGAGCGAATGGTCCCGAAACTGTTTAAATTTGAGCTTTGAAATGTGTGAACTTGTAACAATACCTGTAATTATGCAAATCACTTCAAATGCAATGTATCCAGCTTCCCTCTGATTACAGATGGTTGACCATGAGGAGACTTACATTCACATTAGTTTAGAACGACACTGTCTGATACGACTCACTAATACTTTGCATAGTATCAGATCAGGCCCCCAAATGAACATAATTAAGGCGCTTAATCAGTTGTGTACAATACACtctatttacaaatacatatgtatgGAAATTGATAAATTAACAGATGCCCTCCAGAAGAACAGAGACACACGGAACACACAATAGTCTAGAACCAAGCCTTGTGATCATTTTGTGAGATTGTGTTACTTGACTATTATTTGtgcatacacatgtatatacacattcacactcacacaatgtATGGCAGATGGACAGTTGGAGCCCCATTCCTAGTCATACCTCAGCAAAAGGCTCAATTccatataattgtaatataatttcagtttcattccAATGCTACATCTAAAGTATAGGAAGCGAAACCTCCCTATTGACGGCTGATTTATGGAGCTTTATAGCTGTCAGAGCTGCACACATATGGGTTCCTAAAGCAAATTCTTTTTTGGGTAAAAACTGATATCTTTTGGCACAATTTACATATCAGACATTATTCCATTATCCTACCAGTGTGGTGCCTgtagttttcatatttttgatattttacaataaattattattatgtctgaATATATGTTCTGAGTTTGCAATTATGTTGGTCTGGTCTTCTGCTTCTTCCTAAttaagtatatattataataataactgcttacaaaaggtgaaaaaattgacaattaaaactaggtaaatattttgaaaagctgaACTGAGATACAGCCActtactaaaagaaaaaaacattaaaatacaatttgcaaGGAAAAGGGAGaccatactgtatatattttgtctgcTAATCTGTTTCTCAGCTAATACTGTAGTAATATCTGGGGTGCAGTGCTTTACACTTGTGTGTATCGTagtaaaactgaatttaaacacattattgCTCCAGTTGTGTAGTTCCAGTTTCTCATCAGCAGAATCTTTAACACACGAcaaagatcaaataaaacatgagtACATACCTATCGAATGTTACGGTATCCAGCCATGGATATCTTATCCTTCTGGATTAATATTGCACTAGTTTTCATCTCACAACAAATCCCTCCAGTGTACTTGAATGAACGGTGTGGTTCACATTATTACGTCTACTACTCAAGCCTCCAGTGTCTAAATTTGTTTACAAATGCCTTTATATAGCAGCAATTAAATAAGAAAGTccagaaacatatatatatatatatttattggtgACACTGCTGTTCACTGTACTGATACTCATGGGTCTTCCTTCACTGTCCATTAGGGATTGGCTGGACCCCCGAGCCGGCGTTAGTCATTCTCGTTATTGGAGGTGTCTGGGCTCGTGTCGTCGTCGCTCAGCGCCTCTCTGTTGGTGAACGTCCCCGCCATTGTGGTGCTGAGCCTGGGCTTCACGGGCACCATCTCCGACAGTACAATGTTGTCATTGTTCACCAGCGTGGTCTTGTCCATGTTCTCCTTACTGTGCCTCGCCAGCACGGCCTCCAGGAAGTCATATTTGGGCGAGAGGGTGCCGCTCTCGAAGAGGTACTTCATCAGATAGGAGAAGGCCACGTTCCCCAGGAAGGACGAGAGCATGGACATTGTCTTGAAAGGGAATTTCTGCACGATGATGTACTCTACCGCCCCCGTCAGCGGGTGCTCCTTCTTCACTTCATGCCAGCCCGGGTAATAGATGAATGGAGGCAGTTTGAGGTACGGTTCGCCCCCGCCAATCCTGAGGACCAGGCCGAAGATGTACCCCGCCACCGAGCCGTAGGTGTTGGTGCCCTTGACGAACAGCACGCTGATGAGCTGCGGGAAGATGATGACGTAGACCAGGTCTGAGCTCAGGTACCACAGGCCGTACACGGTGCCCGTCAGCAGAGCCATGGCCGTGGCCAATGCACCGAACACGAAGATGCTGATCCTCATGACCCACACGATCTCCCTGTCGGAG

Function

NR:

description
PREDICTED: high-affinity choline transporter 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85846 True 2379 lncRNA 0.41 2 6204178 6206576

Neighbor

gene id symbol gene type direction distance location
AMCG00014237 NA coding upstream 149743 6033437 ~ 6054435 (+)
AMCG00014229 sept10,LOC105911973,LOC107697805,LOC108430022,LOC103039444 coding upstream 324921 5866905 ~ 5879257 (+)
AMCG00014224 NA coding upstream 429417 5755529 ~ 5774761 (+)
AMCG00014225 NA coding upstream 464257 5721897 ~ 5739921 (+)
AMCG00014223 NA coding upstream 560689 5607773 ~ 5643489 (+)
AMCG00014243 NA coding downstream 28227 6234803 ~ 6239921 (+)
AMCG00014253 NA coding downstream 525048 6731624 ~ 6732517 (+)
AMCG00014259 NA coding downstream 833178 7039754 ~ 7046875 (+)
AMCG00014260 LOC107688668 coding downstream 843760 7050336 ~ 7054907 (+)
AMCG00014261 NA coding downstream 866748 7073324 ~ 7073602 (+)
G68665 NA non-coding upstream 89214 6112656 ~ 6114964 (+)
G68649 NA non-coding upstream 93872 6073717 ~ 6110306 (+)
G68637 NA non-coding upstream 147831 6054535 ~ 6056347 (+)
G68635 NA non-coding upstream 191119 6012682 ~ 6013059 (+)
G68623 NA non-coding upstream 247993 5897070 ~ 5956185 (+)
G68698 NA non-coding downstream 38326 6244902 ~ 6247049 (+)
G68728 NA non-coding downstream 506595 6713171 ~ 6714821 (+)
G68738 NA non-coding downstream 537287 6743863 ~ 6744111 (+)
G68771 NA non-coding downstream 850131 7056707 ~ 7058319 (+)
G68904 NA non-coding downstream 1419412 7625988 ~ 7626404 (+)
G68475 NA other upstream 1552214 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 2072460 4127476 ~ 4131718 (+)
AMCG00014146 NA other upstream 3493849 2706840 ~ 2710329 (+)
G67896 NA other upstream 4074033 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 4301491 1900220 ~ 1902687 (+)
G68830 NA other downstream 1139619 7346195 ~ 7349467 (+)
G68848 NA other downstream 1207064 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 1257927 7464503 ~ 7482560 (+)
G69406 tgfbrap1,LOC102780916 other downstream 3796482 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 3941403 10147979 ~ 10151913 (+)

Expression


Co-expression Network