G68728


Basic Information

Item Value
gene id G68728
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6713171 ~ 6714821 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU85895
CCCATGCAAAAACAGTATCCATTTTAGTGTAACAAAGATAATTCGTTTAGGTAAATCAGTAGATAAAATAAGCCAGTTTGCACatctgtgtccctctctgtcctcccTCATTTAGGCCGGTTCTGTTCAGCTCTGCAGTCCGCCCCCCTGATAGTCGAGAAAGATGAATATTGGCTTAGTTGTGCCATTGTAATCTGCAGGCCCCTTCCCACGCATTAGTCCTCAAGAGATGGAAATGCAATCCTGCGACTttgcatacacaaacacacacacacactcacaaacataCATCAGGAGCCCTTgcgtgtgtctatatatatatatatatatagtccgATGTGTGTATGAATTCAATCAGGAGTTTCCACACTAGCACATCTGcgcggagggggagggggggaaacgTCCGACACCGAGTCCCTGGCAGCGGTCAGGTGAAACGGACTGGAGACACAGTTTTGGGCTCAGCAATTAACGTGTGACATGAGAGGCAGGGACCTTCAGGGGGAAACTGAAGGGCGTCCCTCTGAGAAAAGACTTCAGaacgaacaaaaaaaagaataatacttaaaaaaacaaaaaacacatgacGCACAATAAATCCAGGACATACaggggataaaaaaaacaaaaagctcagACATTCTGCAGACGTTGCACTTGTGTGCTTGTAATGTGGAAATGGtttgtaatatgaatatgtatgatATTAACCGAGCAAACACATTTCTGCACGCCGTGAATTCAGACTCCTTTACACTGTGAAGCCCCTCCCACCCTCCCAGGCTCCTGCAACaaagaggaaataaacacagacCTGCTCTATTCACAGAGCCATGATGACGTCACGGAGGGTCCGGCGCCGCCCTGGACCGCCACGGTCAAATTTCGAATTTCCCCAAATTTCAAATTTCCGTCTCGCGCTCCCGGCTTGAGGGCCCAGTACATGTGAAAGCTGCGCCCGGGCCGAGGACAAGCACGACCACAAACAACACGAGACACGACAGAGAGGGCCACGAGGACGGACAGGGACGCTCTCTGGAGTCAGAAACGAAAAGAGTTCCAATCCCCAGCTGTTCTGCTTCAACGAGGGACAACAACCGTGAAAAGAGCCGGACTCGAAGGTCAACCCGAACTGAAACCCGTCCCCGGGGGGTCCGCACGACGCCGGCCTGTCCCGCTCTCCCGTGTCCCGGTGCGGTCTGGCTCGGGTGACCTTTCCGGGGCCGCGCGGCTCGGTACCTGAGGAGCTGTGTCTGCAGCTCGGGCAGCGCCTCCCGCCCCCGTATCCTCTCGGCGCCCCGGTCCGGCCCGGGGCAGAACAGCCAGCTGCGGTCGTTGGAGCACGGGGCGTCCACCAGCACCTGCGCAGACGGGGACCAGAACCGCACACCGGTAATGTGTTACTAAAGCATTACAGCATGggttgaaaaagaaacacacaaatcaaaataaagtgaGAGAAGGTTCTATAAACAAGGACAAACtttctgccttttctttctttccagataatgcaaaaaataaaataataaatgaccCCCTGCTGGCTTCAGGGCTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85895 True 1563 lncRNA 0.51 2 6713171 6714821

Neighbor

gene id symbol gene type direction distance location
AMCG00014243 NA coding upstream 473250 6234803 ~ 6239921 (+)
AMCG00014237 NA coding upstream 658736 6033437 ~ 6054435 (+)
AMCG00014229 sept10,LOC105911973,LOC107697805,LOC108430022,LOC103039444 coding upstream 833914 5866905 ~ 5879257 (+)
AMCG00014224 NA coding upstream 938410 5755529 ~ 5774761 (+)
AMCG00014225 NA coding upstream 973250 5721897 ~ 5739921 (+)
AMCG00014253 NA coding downstream 16803 6731624 ~ 6732517 (+)
AMCG00014259 NA coding downstream 324933 7039754 ~ 7046875 (+)
AMCG00014260 LOC107688668 coding downstream 335515 7050336 ~ 7054907 (+)
AMCG00014261 NA coding downstream 358503 7073324 ~ 7073602 (+)
AMCG00014267 pou1f1,LOC107688653,LOC107551978,LOC107661330 coding downstream 514252 7229073 ~ 7237562 (+)
G68698 NA non-coding upstream 466122 6244902 ~ 6247049 (+)
G68686 LOC106586545,LOC106582186 non-coding upstream 506595 6204178 ~ 6206576 (+)
G68665 NA non-coding upstream 598207 6112656 ~ 6114964 (+)
G68649 NA non-coding upstream 602865 6073717 ~ 6110306 (+)
G68637 NA non-coding upstream 656824 6054535 ~ 6056347 (+)
G68738 NA non-coding downstream 29042 6743863 ~ 6744111 (+)
G68771 NA non-coding downstream 341886 7056707 ~ 7058319 (+)
G68904 NA non-coding downstream 911167 7625988 ~ 7626404 (+)
G68982 NA non-coding downstream 1159706 7874527 ~ 7874742 (+)
G69006 NA non-coding downstream 1299923 8014744 ~ 8015003 (+)
G68475 NA other upstream 2061207 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 2581453 4127476 ~ 4131718 (+)
AMCG00014146 NA other upstream 4002842 2706840 ~ 2710329 (+)
G67896 NA other upstream 4583026 2126872 ~ 2130145 (+)
AMCG00014111 NA other upstream 4810484 1900220 ~ 1902687 (+)
G68830 NA other downstream 631374 7346195 ~ 7349467 (+)
G68848 NA other downstream 698819 7413640 ~ 7416594 (+)
AMCG00014272 tbc1d23 other downstream 749682 7464503 ~ 7482560 (+)
G69406 tgfbrap1,LOC102780916 other downstream 3288237 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 3433158 10147979 ~ 10151913 (+)

Expression


Co-expression Network