Gene
RNA
| Item | Value |
|---|---|
| gene id | G69232 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 8890586 ~ 8890834 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0001067 | regulatory region nucleic acid binding | molecular_function |
| GO:1990837 | sequence-specific double-stranded DNA binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU86492 | True | 249 | lncRNA | 0.56 | 1 | 8890586 | 8890834 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00014315 | NA | coding | upstream | 14754 | 8875167 ~ 8875832 (+) |
| AMCG00014314 | gabrb3,LOC107673538 | coding | upstream | 66054 | 8795228 ~ 8824532 (+) |
| AMCG00014309 | oca2,LOC107716962 | coding | upstream | 382899 | 8478982 ~ 8507687 (+) |
| AMCG00014308 | herc2,LOC102311645,LOC101466252,LOC102196790 | coding | upstream | 489227 | 8386165 ~ 8401359 (+) |
| AMCG00014307 | LOC103356925 | coding | upstream | 508302 | 8343001 ~ 8382284 (+) |
| AMCG00014313 | atp10a | coding | downstream | 53161 | 8943995 ~ 8972432 (+) |
| AMCG00014316 | ube3a,LOC101472780 | coding | downstream | 113666 | 9004500 ~ 9020633 (+) |
| AMCG00014321 | NA | coding | downstream | 199040 | 9089874 ~ 9130531 (+) |
| AMCG00014323 | LOC104949108 | coding | downstream | 246197 | 9137031 ~ 9144426 (+) |
| AMCG00014322 | nme7,LOC107732015,LOC107590639,LOC107659027 | coding | downstream | 266910 | 9157744 ~ 9172062 (+) |
| G69206 | NA | non-coding | upstream | 154647 | 8734323 ~ 8735939 (+) |
| G69023 | NA | non-coding | upstream | 754376 | 8133288 ~ 8136210 (+) |
| G69006 | NA | non-coding | upstream | 875583 | 8014744 ~ 8015003 (+) |
| G68982 | NA | non-coding | upstream | 1015844 | 7874527 ~ 7874742 (+) |
| G68904 | NA | non-coding | upstream | 1264182 | 7625988 ~ 7626404 (+) |
| G69326 | NA | non-coding | downstream | 475703 | 9366537 ~ 9376350 (+) |
| G69384 | NA | non-coding | downstream | 1010616 | 9901450 ~ 9910048 (+) |
| G69400 | NA | non-coding | downstream | 1083590 | 9974424 ~ 10028351 (+) |
| G69428 | NA | non-coding | downstream | 1163657 | 10054491 ~ 10054711 (+) |
| G69431 | NA | non-coding | downstream | 1164543 | 10055377 ~ 10055733 (+) |
| AMCG00014272 | tbc1d23 | other | upstream | 1408026 | 7464503 ~ 7482560 (+) |
| G68848 | NA | other | upstream | 1473992 | 7413640 ~ 7416594 (+) |
| G68830 | NA | other | upstream | 1541119 | 7346195 ~ 7349467 (+) |
| G68475 | NA | other | upstream | 4238622 | 4649200 ~ 4651964 (+) |
| AMCG00014196 | NA | other | upstream | 4758868 | 4127476 ~ 4131718 (+) |
| G69406 | tgfbrap1,LOC102780916 | other | downstream | 1112224 | 10003058 ~ 10008648 (+) |
| AMCG00014345 | NA | other | downstream | 1257145 | 10147979 ~ 10151913 (+) |
| AMCG00014407 | LOC107725344 | other | downstream | 4355475 | 13246309 ~ 13251732 (+) |
| AMCG00014423 | pou2f1b,LOC107748141 | other | downstream | 4764404 | 13655238 ~ 13689188 (+) |
| AMCG00014456 | NA | other | downstream | 5298730 | 14189564 ~ 14205014 (+) |
