G69391


Basic Information

Item Value
gene id G69391
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9901357 ~ 9912021 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU86687
cttgaattgAAGAtccaacacacatttattgaatACAAAGCCCGTGGATATCCAGGTGCAGACGCTTGAACAGTCAGTGCCAGGAGCCCACGTCTTGGATCAGGCTCGTGCTTCTGTTTACATTGCGCGGGCGGCGTCATTAACTCAGCGCGGATGCGGCGGAATGACCGGCGCGCGTTTCACACGCCGCGTCCAAAGGGCGTCTCATGTGGCCGCGCCGCGCCGCGCGGAGAGCCGTGCAGGAGTCACTCTTCTGCAAacacttaaaagaaaaacaaaacacgaaaCAGAAAAATGTTCACGTTTTCAAGTTTTgccctttttttgttgttgtttggttaTGTTTTTGTCCCCCTATTCCCTGCTGTGGAGTTCATTAGTTTGgtaggcaaaaaaaaaagaaagaaaaaaaatcctcaagTATAACAAGAGACGAACAGTTAGTGCTGATTTTCATTTGCATaaattttcatatattttagtGAAAATAATAGACGAGCGGAGGAGAGCGGTGCTCAGTCGAGTCAGTGCAAAGGAAAATCTTAGGAAGGATCCTATCGTGGCACAGGAGAGAAATCCCTACATTCATTTCATCAAAATATCAATCACAAGCTTGATTTTTCTGTGTATTCCTGGATTTACACCTGTGGAACAGATGCCACATAGAGCTGCTCCCTGAAGATCATTTGTTTCCTTGATGGGGCATTTCTGAGCCGGCGTTCCGGTTGCCATGGCTTTACATTCCAGTGGAGGTAATGTGACAAAATGGTGGAGTGAATTCAAAGGAGAGTATCGTGGATCCAGtaagtttgtatttttggtAAAGGTGCATTGCTTGTAGATTAAATTCTATTTCTTCCCTTACAGGAATAGCCCGTACACAGCTCCCCACAATCCCAgaagcatattttaaaatgaggtATTGCAGCAGAAGGAGAATGGACACAACACACAGCTTATCCTTCTTCTGTGTTTCTGAGGAGAAAAGTGCATTACTGCTTGAGTATTGATGCTGCAGGCTGTTTTCTTGGGTAGACTATAAAGATATGCAAATTCagttgttaaaatgaaaaaagtagtccattttgtatttttgtttctcataGTAACAGTTCATTATGCGAATGGCTTCTGGATTTGCTGTTGTCTTTTATTACCAAATCTTGTTCTTTGTGAGCGAGATTTGAGCTGTGCAGGTAGAAAGCAGGAAATTAAAGATATTTCAAAGGCATAGTCTGCTTTGACTTGAATTTTTGCAGTCCAGTATTAAGGAAAAGAGAACAGATTCATTCTAAATAATGTGTAGCCtgttgtaaaacaaatgtacatccaccttaaatacactgtaacaactgtataaataaaagataaGTTGAAGCTTGCAGTTGTAAACTCTCCATATTCCATTTCCCACTTTTTGTGATAGTTATGGACAACTCCACATACTGATCTTTCTAAGAATACATTTAAG
>TU86688
cttgaattgAAGAtccaacacacatttattgaatACAAAGCCCGTGGATATCCAGGTGCAGACGCTTGAACAGTCAGTGCCAGGAGCCCACGTCTTGGATCAGGCTCGTGCTTCTGTTTACATTGCGCGGGCGGCGTCATTAACTCAGCGCGGATGCGGCGGAATGACCGGCGCGCGTTTCACACGCCGCGTCCAAAGGGCGTCTCATGTGGCCGCGCCGCGCCGCGCGGAGAGCCGTGCAGGAGTCACTCTTCTGCAAacacttaaaagaaaaacaaaacacgaaaCAGAAAAATGTTCACGTTTTCAAGTTTTgccctttttttgttgttgtttggttaTGTTTTTGTCCCCCTATTCCCTGCTGTGGAGTTCATTAGTTTGtGAAAATAATAGACGAGCGGAGGAGAGCGGTGCTCAGTCGAGTCAGTGCAAAGGAAAATCTTAGGAAGGATCCTATCGTGGCACAGGAGAGAAATCCCTACATTCATTTCATCAAAATATCAATCACAAGCTTGATTTTTCTGTGTATTCCTGGATTTACACCTGTGGAACAGATGCCACATAGAGCTGCTCCCTGAAGATCATTTGTTTCCTTGATGGGGCATTTCTGAGCCGGCGTTCCGGTTGCCATGGCTTTACATTCCAGTGGAGGAATAGCCCGTACACAGCTCCCCACAATCCCAgaagcatattttaaaatgaggtATTGCAGCAGAAGGAGAATGGACACAACACACAGCTTATCCTTCTTCTGTGTTTCTGAGGAGAAAAGTGCATTACTGCTTGAGTATTGATGCTGCAGGCTGTTTTCTTGGGTAGACTATAAAGATATGCAAATTCagttgttaaaatgaaaaaagtagtccattttgtatttttgtttctcataGTAACAGTTCATTATGCGAATGGCTTCTGGATTTGCTGTTGTCTTTTATTACCAAATCTTGTTCTTTGTGAGCGAGATTTGAGCTGTGCAGGTAGAAAGCAGGAAATTAAAGATATTTCAAAGGCATAGTCTGCTTTGACTTGAATTTTTGCAGTCCAGTATTAAGGAAAAGAGAACAGATTCATTCTAAATAATGTGTAGCCtgttgtaaaacaaatgtacatccaccttaaatacactgtaacaactgtataaataaaagataaGTTGAAGCTTGCAGTTGTAAACTCTCCATATTCCATTTCCCACTTTTTGTGATAGTTATGGACAACTCCACATACTGATCTTTCTAAGAATACATTTAAG

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU86687 True 1471 lncRNA 0.41 3 9901357 9912021
TU86688 False 1258 lncRNA 0.42 5 9901357 9912021

Neighbor

gene id symbol gene type direction distance location
AMCG00014332 NA coding downstream 429098 9467324 ~ 9472259 (-)
AMCG00014333 inpp4a coding downstream 483121 9373456 ~ 9418236 (-)
AMCG00014331 NA coding downstream 534321 9358847 ~ 9367036 (-)
AMCG00014325 NA coding downstream 672730 9216869 ~ 9228627 (-)
AMCG00014326 NA coding downstream 754020 9144538 ~ 9147337 (-)
AMCG00014341 fhl2,fhl2a,LOC107716797,LOC107676452,LOC107688730 coding upstream 115631 10027652 ~ 10043566 (-)
AMCG00014346 uxs1,LOC107721615,LOC107551074,LOC107676432 coding upstream 280608 10192629 ~ 10197751 (-)
AMCG00014348 NA coding upstream 328985 10241006 ~ 10256375 (-)
AMCG00014349 NA coding upstream 387982 10300003 ~ 10301361 (-)
AMCG00014347 NA coding upstream 406223 10318244 ~ 10328231 (-)
G69382 NA non-coding downstream 5777 9894726 ~ 9895580 (-)
G69373 NA non-coding downstream 309976 9591176 ~ 9591381 (-)
G69372 NA non-coding downstream 311276 9589824 ~ 9590081 (-)
G69352 dcaf6 non-coding downstream 546119 9349788 ~ 9355238 (-)
G69250 NA non-coding downstream 902731 8998426 ~ 8998626 (-)
G69394 NA non-coding upstream 4824 9916845 ~ 9917335 (-)
G69396 NA non-coding upstream 23154 9935175 ~ 9935398 (-)
G69427 NA non-coding upstream 141716 10053737 ~ 10054275 (-)
G69483 NA non-coding upstream 425866 10337887 ~ 10340946 (-)
G69495 NA non-coding upstream 508159 10420180 ~ 10479009 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other downstream 584190 9305239 ~ 9317167 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other downstream 1517133 8383285 ~ 8384224 (-)
AMCG00014298 NA other downstream 1742767 8155932 ~ 8158590 (-)
AMCG00014297 NA other downstream 1762231 8134903 ~ 8139126 (-)
AMCG00014278 NA other downstream 2478066 7413729 ~ 7423291 (-)
AMCG00014340 NA other upstream 89113 10001134 ~ 10017751 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other upstream 146076 10058097 ~ 10061230 (-)
G69537 NA other upstream 884695 10796716 ~ 10798147 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other upstream 1213008 11125029 ~ 11137086 (-)
AMCG00014374 NA other upstream 1747990 11660011 ~ 11667537 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_00918092_00931288 NA misc CI01000024 null 916697 ~ 931468 (+)