G69722


Basic Information

Item Value
gene id G69722
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11719318 ~ 11722767 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU87100
TGGCAAGGGGGTGTTATTTCACTTCAGAGACTCGGGCTCATCCTCTACGAGATTGATAACATGGCCGCAATCAAGGGCAGGGTGTGGCGCAGAGAGGAATACAATGTTAAATGCTACAGTTCAGTATTTGTTGCTAATCCACAGAAAAGCTCCGTCTGTCAGTGTTCTCCAGCGTTTCAGAATAACGCACCATTTTCACTTCTCAAATCTCCCCATGCTACTGTACTCTTTTTAATGTAGAAAcgttttaagaaaatgaaaaacaaaggcaCAATGAATTTCAACTCattcttttttaatatgcacAAGAGTTGAAGGAAACAATGAGCCACCTTAAAGAGAAATTGAATCTAAAATTTATAAAAAGATATAAATAATCAGAGGCCAAAATGCTatctgtcacattttaaaacaagtttcttTAGCAAGTAAAAATCTTGCAATGCACATAAGCTTGTATCGGTTTCTGATACAAGACAACTCTGCTCTTTAAAGTGGCTCTTTCTAGGCGTCTAGATATTTCATGAATGTACACCTGCTAAAGTTTTGTTCATCAGTAATAAATGGCTATTCCAGAAAGCTCCGACTGCATTCCAAATCCCGACATCTTTGCAGTAGTTAGCAGCCAAAACATAACTACATTAGTCCAAATGCAATTTTTCATCcctttacaaataaatgcacaggGAAACGAAGACATTTATGCCCAGTCACAACAGCAATAAAACCCATTCCAATAATGGTATCATCTTTATCACGATAcgcatgttaaaaacaaaactccctGTTAATTTCGACAGTAAATACAATGTTATTATTCTGCAGAATATCCCAGATGTACAGTTAGCAGCCACTGCAGCTTTTATACAAGCCTTATATATGACAATTGGAAagatatacttttttttgtacaatttaAGTTGTAGCATGTAaccttcaaaaagaaaaacagaaaaaaaaaaaaaaagtattgcaaaGGTCATGGGCCACATGATTcaattatttctttaattttaatactcTGTAATTGCTGCTTTTCACAATTATTAAGCACAGGTTACAGTTTTGAAGTGTGCGTAAGACTGAATTACTGCAAACTTGGAAGCTCCACAGATTAAACCCAGTACAATCCAACCATTgtcactacttttttttttttctcaatttaaactaaaaatatataatcaattctaaaaaggaaacaaataaaacaaaacaaaaaacagctgaaaGCAAGATCGGTAGTTATACATTTTAGGAGAGGAATTATCAGGACACTGCTCAAAAGTTTAACATCAGAACTCCTGCTTTCGTCTTGAAAAGCGTAACGGAGGTTGTATCTCAAAATACCATGCACAGCGTTTGACTACTTTGCTTTGAATGAGCAGGAACACAGGTTGAAATTAGTAGTCAAGCGGGACTTCAGTCTTCATTAAGTGTGATACTTTGTCAAGTGTCAGCTCCAAACAGAAGTTcagtttttatattgtgtttttccttttccttgtcCCCCAGACCTACAAAAATGAATGCtacaaaggttttttttgttttttgattttttaaagaatttaaGTAAAATGAACCATTTCTCCTCTTTTATCATTTGTCTTTTCCCCACAAGTAATTTTGTTCATtgtctttttacatttaaaaaaaatcccatctTCCGAAATgattctcaaaaaaaaaaaaaaaaaaaaaaaagctgaggCGATGGATGACAAAAGGTTCGCCCATCCACGTCGACATTTTCTCCTCCACTTGCATTCTTCTCAAAAATCAAAGCTCTTCAGCCGTAATCTGGAGATCATTTCGCCACGTGCCAAGTTCTGAGTTTCAACATCTAAAAACAGGGATACTGGTTTTAAAAGTGATTACTGGAGTTGGTGGTGAGAATGTGATACCAGGGAAggaaaggcaaaaaaaaaaaaaaaaaaaaaaaaacacatttgaaaatgctAGGATTTTTCTCTTCACTGATATGATGGCAAATAAAATGGGTTCATATATTCATGCACACGTAATCCTTAGTCTGTGTGATAGCAACGTTTGGCAACTGCAGAGTGACTGACAAGAGGCTTTTATTTCTTACTTTAGAAGCATCATTCGAAGATGCACAAATTGTCTTTTGATCcttcagtgcttttttttattttatatattttttttattgtatttttttctggttaGTGAATCTTGTGGTGTATTGAAGTTGGTAGGTGGTGCAGAGCAGCTGTAAAATCCAATTCTCCTTAAAATTTGAACTCCTTGGTTTGCAGATTGGAGGCGGGGTCAAAATTGAAGGTTCCTCCTTGAGTAGCTTCAGGGATCAGGCTGGGATCCTCATCGATCTGCAACAGGAGGGACGGGCAGCAGTCAGAATTAGGGTCGCAACATCACAAGACAATGGCTTCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87100 True 2420 lncRNA 0.36 2 11719318 11722767

Neighbor

gene id symbol gene type direction distance location
AMCG00014381 NA coding upstream 7387 11711398 ~ 11711931 (+)
AMCG00014377 NA coding upstream 22392 11689233 ~ 11696926 (+)
AMCG00014378 NA coding upstream 41137 11668156 ~ 11678181 (+)
AMCG00014376 cab39l,LOC103356757 coding upstream 59772 11644028 ~ 11659546 (+)
AMCG00014373 NA coding upstream 78858 11605968 ~ 11640460 (+)
AMCG00014382 NA coding downstream 37134 11759901 ~ 11761901 (+)
AMCG00014375 NA coding downstream 43661 11766428 ~ 11767590 (+)
AMCG00014383 NA coding downstream 147258 11870025 ~ 11877714 (+)
AMCG00014387 NA coding downstream 177755 11900522 ~ 11901421 (+)
AMCG00014388 NA coding downstream 220808 11943575 ~ 11944826 (+)
G69681 NA non-coding upstream 77866 11641083 ~ 11641452 (+)
G69610 NA non-coding upstream 498044 11221070 ~ 11221274 (+)
G69556 NA non-coding upstream 757389 10959326 ~ 10961929 (+)
G69540 NA non-coding upstream 881088 10837204 ~ 10838230 (+)
G69499 NA non-coding upstream 1225922 10493147 ~ 10493396 (+)
G69739 NA non-coding downstream 61098 11783865 ~ 11784083 (+)
G69778 NA non-coding downstream 877337 12600104 ~ 12600313 (+)
G69833 NA non-coding downstream 1257492 12980259 ~ 12982434 (+)
G69959 NA non-coding downstream 1611447 13334214 ~ 13335185 (+)
G69961 NA non-coding downstream 1629566 13352333 ~ 13380404 (+)
AMCG00014345 NA other upstream 1567405 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 1710670 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 4236758 7464503 ~ 7482560 (+)
G68848 NA other upstream 4302724 7413640 ~ 7416594 (+)
G68830 NA other upstream 4369851 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 1523542 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 1932471 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 2466797 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 2579680 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 3499147 15221914 ~ 15242333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001478 kpna3 coding NC_007112.7 CM002885.2 46666696 ~ 46706639 (-)
grasscarp (Ctenopharyngodon idella) CI01000119_01766511_01769770 EBPL coding CI01000119 null 1764593 ~ 1769796 (+)
tiger barb (Puntius tetrazona) G5223 NA non-coding NC_056699.1 CM032068.1 22715536 ~ 22733117 (+)