G69959


Basic Information

Item Value
gene id G69959
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13334214 ~ 13335185 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU87406
GCAAACGtccaaaatcagcaggggatcaaatacttttttccctcactgtatatagagTTAGATTATTCAGGACTGCAAAATATAAACCATTCTCttcttgtctttttgtttaTGAAGAACCTGTCctttaaaggagtgaaggaggcTGAAGTGTTCAATCTTTATTACAAGCTAGCAGGGAAGAATGACATAGGAACAATCCAATTGTATGAGAATTATCAGAGGCGAATGGCACAGAACCCGAATTTCTGGAAAACATaatatatggatttttttttacagctggaACTAAATTCTTCAGAAACCCCTTAATAatttcaacaaacaaaacattcacaCCACCACAGCTGTGTTTCTTGAACTCTCAGCATCTGAGTTGGTTTGTAGGGGTTTTATATCAGATCAAACCATGACTTCCTCTAtaccaaaaacaataacttttttaatgactggtttatattatattttttgtttgcagcaCAAATAAACTTGGATAAACATGTCTGAGTGCTTCTGATTTGGGCCAAGGCTTGCCAAATGATGGATGTCAGTGCAAATGGTTATTAACCATCATTCA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
TU87406 True 577 lncRNA 0.36 2 13334214 13335185

Neighbor

gene id symbol gene type direction distance location
AMCG00014415 eed coding upstream 3124 13323367 ~ 13331090 (+)
AMCG00014416 NA coding upstream 32341 13291329 ~ 13301873 (+)
AMCG00014417 NA coding upstream 49920 13276573 ~ 13284294 (+)
AMCG00014414 NA coding upstream 59911 13266017 ~ 13274303 (+)
AMCG00014405 NA coding upstream 88580 13240840 ~ 13245634 (+)
AMCG00014419 NA coding downstream 5002 13340187 ~ 13360020 (+)
AMCG00014418 NA coding downstream 26563 13361748 ~ 13371376 (+)
AMCG00014420 NA coding downstream 114913 13450098 ~ 13451219 (+)
AMCG00014422 NA coding downstream 255735 13590920 ~ 13615018 (+)
AMCG00014421 NA coding downstream 295482 13630667 ~ 13650074 (+)
G69833 NA non-coding upstream 351780 12980259 ~ 12982434 (+)
G69778 NA non-coding upstream 733901 12600104 ~ 12600313 (+)
G69739 NA non-coding upstream 1550131 11783865 ~ 11784083 (+)
G69722 NA non-coding upstream 1611447 11719318 ~ 11722767 (+)
G69681 NA non-coding upstream 1692762 11641083 ~ 11641452 (+)
G69961 NA non-coding downstream 17148 13352333 ~ 13380404 (+)
G70054 NA non-coding downstream 359630 13694815 ~ 13696871 (+)
G70221 NA non-coding downstream 832261 14167446 ~ 14171012 (+)
G70271 NA non-coding downstream 1131519 14466704 ~ 14467744 (+)
G70286 NA non-coding downstream 1844660 15179845 ~ 15180820 (+)
AMCG00014407 LOC107725344 other upstream 82482 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 3182301 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 3325566 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 5851654 7464503 ~ 7482560 (+)
G68848 NA other upstream 5917620 7413640 ~ 7416594 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 320053 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 854379 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 967262 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 1886729 15221914 ~ 15242333 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 2340446 15675631 ~ 15685899 (+)

Expression


Co-expression Network