G69961


Basic Information

Item Value
gene id G69961
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13352333 ~ 13380404 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU87408
TCTGAAACAGTAACATATTTACTTTCATATGGTGCCTTGAATAAGTGCAGATCTTTGTGTAGGAGCTGAAACAATCATTCACATATGGtacatgatgtttttttttaaatataattaatgtattttattaatttattggctTCATTCCTTACTTGCTGTCAtccaaatgaaaacaacaacaaaaacataatttacaatctgtattttttctgGAGATTTCAAAGGACATTTATTGAAATTGCTTTTTGAAAGAACATTGCTGCTATGTTTTCCTCATACTGTTGTTTGTACAGTGTGTAGGAATATATTCATCTCTGGTTTATCGGACATTTGAAATGCTTTTTGAAAGAACATCACTGCTGTTTTCCTCATACTGTTGTTTGTACAGTGTAGGAATATATTCATCTCTGGTTTATCGGACATTTGAAATGCTGTACTGAACATACGATCCAAATGGAGAGAACAGGGCAGATGTGTTGGTTGAAGTCCCTGAGAGTGGATTGGACTGCAGCAAAGGTGTCAGTGGTAGTTGATATACAGCATGCCAACTaatggtggggaaaaaacaataccttcagctttctgaaacaaaataacaccTTAACATTCAATATAACTGTTCTGGATTGTGCGCTTAAGAGCCTTTGTACGTACTAATGAAAATAACGAAATACCGTGAACTGATGGGAAGCAATAGAATGCCAATAAACTATTGTAATTAACAATGACTCTGCCGTCAATGCTTATCGGTttctgaattaaacaaatcaatttcaaCACAATTGGGATAACATATTCCACTTCATTTGAACATCCCATTGGCAGCTGGAAAATGATATGTAAACCTACTGTAAAATTATTCTTCATAAAAAGTAGATGTTAAAATTAGTGTCACTTCAGCTGCACAGGCCACAACATGTCCAAATCGCACCATTAAAGTTTTACATTACTTTGGCAGACGAGACCCAAGAGACAATCCATGTTTAAACATGATTAACCACACAGTATTCATGACTTCATTCATGAGATTAATATATTTGGTACATGCTTCATTTATATAGTGCAGTACACAGTGTATGGTAGGCAATAATATACCAACAATTATGCCTGCCACTTACAAATAACCATTCCCAGTAGAAACTGTTCTAAAATAGAAATATTCATGttcaatgatttaaaaaggttgccaatttaaaatgtcaaaacctacacctaatatatatatatatatatatatattagttctATTGAAAAGGGTATTGGGGAACTATGGCATCTCAAAACCAATAgtaatcaatattttgtatgtgaGTGTTGCAGTACTACATTAATACCCAAAAGACTCCTCAGACTCAGGGATAAGTGTTAGACtaactgtaaaatatgaagCCAGGAATAGTCTTGGATTTTGAAGGCCTTCATTAATTACAGCCTGAGAAAGACTCTGCAAACCAAACTTTATGCGTAGGAACACATCATCATTAAAGAGGTACTAGCAGGAGAGTCTGGGATGCGTACTGTGGTGGCAGAAGACTCGAGGCTTCATGCAAGTGGAATTGGTGACAAGGCTTTAGTTGTTTTCTGAGGGGAGACGTTTTTGGCCAGCAAAAGCAGAGTATTAAGTCTGTTTCAGGAGTTATAACTTGTCACCCTCAGTCAGTGTGGCATTAAGAgtttgcatttataaaataaaaagtagatttaaatgttttaacattgtCTTAAATGCAAAGTAGTATTTTTATCACCCCCTGATGAAAGGTGATTTTGATTGTTCTGCTTCTAATGCAGCAGTTTAAAGATGCACGAGTCAGCATTGCGTCGATATGTCAGCAGtgtcagatatatatatatgtaataggAGAGCTTGGCTATGTGCAGCTGTTTTACACATCCTGAACCTCCATGGCCTCCTTCGGCCAGGAGTAGCAATCCAGGGAGAAGGAGTCGTAGTCAGGGCTGTAGATGTGAGAGCGGATGAAGGCCTCTTTGTCTTTAGGCTCAGGGTACCACGAAGCAATGTCCTTCTTATAGGCATAGTCCACAATCTGAAAGGAAATAATTCGCATTCAAGATCATCTCATTGGAGTTAAaggaatatataataatcacacaCAATTAGTAGCTTTAGGCAAAATCTAGGTActacaaacatttaattcaggGACTGCTTGTAGACACTGTTTG
>TU87409
CTGAAACAGTAACATATTTACTTTCATATGGTGCCATGAATAAGTGCAGATCTGGGTGTAGGAGCTGAAACAATCACTCACATAtggtacatgttttttgtttttatataattgtaatttattgaatACGGGGTTCACTCCTCACTTATATGCTGTCATCCAAAtgaatacaacaacaaaaacaatttacaaaggACATTTATTGAAATTGCTTTTTGAAAGAACATCACTGCTGTTTTCCTCATACTGTTGTTTGTACAGTGTAGGAATATATTCATCTCTGGTTTATCGGACATTTGAAATGCTGTACTGAACATACGATCCAAATGGAGAGAACAGGGCAGATGTGTTGGTTGAAGTCCCTGAGAGTGGATTGGACTGCAGCAAAGGTGTCAGTGGTAGTTGATATACAGCATGCCAACTaatggtggggaaaaaacaataccttcagctttctgaaacaaaataacaccTTAACATTCAATATAACTGTTCTGGATTGTGCGCTTAAGAGCCTTTGTACGTACTAATGAAAATAACGAAATACCGTGAACTGATGGGAAGCAATAGAATGCCAATAAACTATTGTAATTAACAATGACTCTGCCGTCAATGCTTATCGGTttctgaattaaacaaatcaatttcaaCACAATTGGGATAACATATTCCACTTCATTTGAACATCCCATTGGCAGCTGGAAAATGATATGTAAACCTACTGTAAAATTATTCTTCATAAAAAGTAGATGTTAAAATTAGTGTCACTTCAGCTGCACAGGCCACAACATGTCCAAATCGCACCATTAAAGTTTTACATTACTTTGGCAGACGAGACCCAAGAGACAATCCATGTTTAAACATGATTAACCACACAGTATTCATGACTTCATTCATGAGATTAATATATTTGGTACATGCTTCATTTATATAGTGCAGTACACAGTGTATGGTAGGCAATAATATACCAACAATTATGCCTGCCACTTACAAATAACCATTCCCAGTAGAAACTGTTCTAAAATAGAAATATTCATGttcaatgatttaaaaaggttgccaatttaaaatgtcaaaacctacacctaatatatatatatatatatatatattagttctATTGAAAAGGGTATTGGGGAACTATGGCATCTCAAAACCAATAgtaatcaatattttgtatgtgaGTGTTGCAGTACTACATTAATACCCAAAAGACTCCTCAGACTCAGGGATAAGTGTTAGACtaactgtaaaatatgaagCCAGGAATAGTCTTGGATTTTGAAGGCCTTCATTAATTACAGCCTGAGAAAGACTCTGCAAACCAAACTTTATGCGTAGGAACACATCATCATTAAAGAGGTACTAGCAGGAGAGTCTGGGATGCGTACTGTGGTGGCAGAAGACTCGAGGCTTCATGCAAGTGGAATTGGTGACAAGGCTTTAGTTGTTTTCTGAGGGGAGACGTTTTTGGCCAGCAAAAGCAGAGTATTAAGTCTGTTTCAGGAGTTATAACTTGTCACCCTCAGTCAGTGTGGCATTAAGAgtttgcatttataaaataaaaagtagatttaaatgttttaacattgtCTTAAATGCAAAGTAGTATTTTTATCACCCCCTGATGAAAGGTGATTTTGATTGTTCTGCTTCTAATGCAGCAGTTTAAAGATGCACGAGTCAGCATTGCGTCGATATGTCAGCAGtgtcagatatatatatatgtaataggAGAGCTTGGCTATGTGCAGCTGTTTTACACATCCTGAACCTCCATGGCCTCCTTCGGCCAGGAGTAGCAATCCAGGGAGAAGGAGTCGTAGTCAGGGCTGTAGATGTGAGAGCGGATGAAGGCCTCTTTGTCTTTAGGCTCAGGGTACCACGAAGCAATGTCCTTCTTATAGGCATAGTCCACAATCTGACAGCGATTTTGAAGGAAACCTCCCTGATGGTGCTGAGAGGAGGGTACAGTCGCCCTTCAGCCAGGTTCTCCTCTGTCACCATCTCAGCGATGGCCTGAGGGGGATACAGTTTTCACTAGAGTTTGTGCATGTGAAGAAAACCACAGACCTCAGAGCAGCATCTTTCTGTGGGCTTCATGTAAACTCCAGTGGGTCATTTTGCTGTACTGGTTGCCAAAcagctacattttaaaagattacaTTACTGAGACTCAGAGTGATGACAATTAGACCCAATTTCAATCACCCAAAAACTAAGGTGACTTCATgtcattaaaagcaaaaacaaggaTTTGATATACAGAGGTGTGAGTGGCAGGCTGTACCTCTGCGGTGGTGAGGAAGATGTCATCAGAGATATGGCGTACGCCACAGGCTATCACCCCCAGAGCCACCCCTGGGAACACATAGGCATTGTTGCCTTGGCCTGGGATGAATGTGCGTCCATCAGGCAGCGTGACTTTATCGAAGGGACTGCCACTGGCAAAGATGCCACGACCCTGGCAAAAAGGAGTGGGGaaaaattacattacatcatTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87408 False 2187 lncRNA 0.36 2 13352333 13379593
TU87409 True 2506 lncRNA 0.40 2 13377534 13380404

Neighbor

gene id symbol gene type direction distance location
AMCG00014415 eed coding upstream 21243 13323367 ~ 13331090 (+)
AMCG00014416 NA coding upstream 50460 13291329 ~ 13301873 (+)
AMCG00014417 NA coding upstream 68039 13276573 ~ 13284294 (+)
AMCG00014414 NA coding upstream 78030 13266017 ~ 13274303 (+)
AMCG00014405 NA coding upstream 106699 13240840 ~ 13245634 (+)
AMCG00014420 NA coding downstream 69694 13450098 ~ 13451219 (+)
AMCG00014422 NA coding downstream 210516 13590920 ~ 13615018 (+)
AMCG00014421 NA coding downstream 250263 13630667 ~ 13650074 (+)
AMCG00014424 NA coding downstream 363717 13744121 ~ 13747498 (+)
AMCG00014426 NA coding downstream 369269 13749673 ~ 13788076 (+)
G69959 NA non-coding upstream 17148 13334214 ~ 13335185 (+)
G69833 NA non-coding upstream 369899 12980259 ~ 12982434 (+)
G69778 NA non-coding upstream 752020 12600104 ~ 12600313 (+)
G69739 NA non-coding upstream 1568250 11783865 ~ 11784083 (+)
G69722 NA non-coding upstream 1629566 11719318 ~ 11722767 (+)
G70054 NA non-coding downstream 314411 13694815 ~ 13696871 (+)
G70221 NA non-coding downstream 787042 14167446 ~ 14171012 (+)
G70271 NA non-coding downstream 1086300 14466704 ~ 14467744 (+)
G70286 NA non-coding downstream 1799441 15179845 ~ 15180820 (+)
G70378 itm2b,LOC108430053 non-coding downstream 1970238 15350642 ~ 15430852 (+)
AMCG00014407 LOC107725344 other upstream 100601 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 3200420 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 3343685 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 5869773 7464503 ~ 7482560 (+)
G68848 NA other upstream 5935739 7413640 ~ 7416594 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 274834 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 809160 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 922043 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 1841510 15221914 ~ 15242333 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 2295227 15675631 ~ 15685899 (+)

Expression


Co-expression Network