G70054


Basic Information

Item Value
gene id G70054
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13694815 ~ 13696871 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU87518
TCTGGGATGTATAGGCACCACGTGGCAGTGCAGTTggttaaaacacaaaactcatGAATGTCgtatttaaaagggaaaattgcaattttatttaattttaaacctaGAAGACCTTGTTTGCTTATTCTCATCTCGTCTAAACTTTGAAGTGTCTAGTACATAATCTCTAGACCAAAAGATGGACTTCGTtcattttgcatatttcttGCATTCAATTTATCCATAAAGCAACCACTTAAGACCAAATGTATACTATTGACACtttctttactttaaaaaaaaaaacaaaaaaaaaaacaccaaaacttacttcagttttaatttttgacAATCCTTATTCCATTTCCTCTTGATTTTTTGAATGTAGATGTTGGTGTGATTGTACTGCCTTGCTGGTTGTAGCATATATGTCCCAGACAACTTCTTCAGAGAAAACCAAAGACTTCTTAATGATTGTATGAACTAAACAGTCTTCAGTCCTGCATCAGCCTTTATTTCACAAAGAGAAACATGAGTTTCAAACTGGGGTGGTAcatgttttgtgtcatttaatTTCAACAACATGCAGAATATGAACACAAACGTGTTGTATATAAAATCCATTATTAGTCTCTCCTTGTGTGTGGCCAGAACTTAAGTTATATAATAACCTTTAAAATTGATACAAGTATTTTTTACCCATGAAATTTCAAACCGTATGCAGACTTCTGGTACTTTAGACATTGTTTGGTCAAAGGCTTTTTTGAATCATTGACTGTAGTGTGGGGCGTGGTGGGTAGAGGCATGGCAGAGTTTCTGGGCATCTCTCTTGGTCTGTAATCTGCCTATTTATCAAGGAAGAGACTCCTTAGACTAACAGACCCTCAGGTGCTTAGCTACTGGTTGGGGGGCTGAAGACAGGGATGTAATTGGCTACTCTGATGGGTGCTTTTATTAACCCTTTTGTGGGCTGGGTGATGTGAATTAATACACACTGAGGTATTCTCCTGAGCGCACTGCAAATGCTTAggagaagctgttttttttttttaactgctagctctttttttttttctgggatttaactgtttttgtttcccttttttatttaatttaattttccttctaCACTGTTCCACTGTGCAACTATGCATTGTAGTCCTCAACCTTATGCTAGATATGTCTAAATGTTCTTGTGCATTGGTAAatgaaggatttgttttttttttttgttggtttttttattttatttttttagtggGGGGTTGTAGGATCTTACAAGCTCTATCCCAAAGCAAAAATCCAAATATTAAATGTACGCCTGACGCAAATACCAAAGATTTGTTTCTTCTTGCAAAACCTTAGGCTTGTGTATTAAATGCAGTTACCCAGCACTTGCATTAGTCTAACCTCAGTAATTCCAAAGCTTAGATGTATATTTTGGTATATTTCTGGGATAATTAAAAGGTTTTGTGTCGTTTAAAATTCTTGTTCGTTTTGGTGTATTGCTCTCTTCAGTCATagcatggagaaaaaaaatactgaactgTCTTACTCTTGGTAGtttaaaaaatagtatttttgtatgttttgggtGTGTCAATGTTCGTGATATCAGTTTTCACTGCCCGGttatcatgatttaaaaaataaaaaatgtacatattaattcAGTTGTAGATTTCACAGAATGATCATTCtgtataattgcattttcaCCGACTGCAGTTTCAGCTAAAGGATTGTGTCCCCATTTTAACTTAATatgacaaattacattttttcctatacacacacacactgtagatTTCAATTTGAAGTTGGTCTAAGATTTTGTTCCTGATGTACATCAATACAGCCAGGCCATATCCAAATCATGGATTGCTGCCTCAAACACAAGCAGCTACATGGCTGGGATGTTATGGTTTTCAGCCAGTACATGTCAAATGGGGATACATTTCTTTTTGCTGCCAGTTAAAAACAGCTACAACATGGTGGCTTAGATCTGAAAGATTGTGTAGAAATTTAAGTATGTGAATCAGGATAAATGGTAGATTTGTGTAGATGCATTtgtctgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87518 True 2057 lncRNA 0.35 1 13694815 13696871

Neighbor

gene id symbol gene type direction distance location
AMCG00014421 NA coding upstream 44741 13630667 ~ 13650074 (+)
AMCG00014422 NA coding upstream 79797 13590920 ~ 13615018 (+)
AMCG00014420 NA coding upstream 243596 13450098 ~ 13451219 (+)
AMCG00014418 NA coding upstream 323439 13361748 ~ 13371376 (+)
AMCG00014419 NA coding upstream 334795 13340187 ~ 13360020 (+)
AMCG00014424 NA coding downstream 47250 13744121 ~ 13747498 (+)
AMCG00014426 NA coding downstream 52802 13749673 ~ 13788076 (+)
AMCG00014425 cul4a,LOC102780633 coding downstream 94278 13791149 ~ 13813879 (+)
AMCG00014427 NA coding downstream 123485 13820356 ~ 13827551 (+)
AMCG00014439 LOC107748345,LOC107577958 coding downstream 185848 13882719 ~ 13903655 (+)
G69961 NA non-coding upstream 314411 13352333 ~ 13380404 (+)
G69959 NA non-coding upstream 359630 13334214 ~ 13335185 (+)
G69833 NA non-coding upstream 712381 12980259 ~ 12982434 (+)
G69778 NA non-coding upstream 1094502 12600104 ~ 12600313 (+)
G69739 NA non-coding upstream 1910732 11783865 ~ 11784083 (+)
G70221 NA non-coding downstream 470575 14167446 ~ 14171012 (+)
G70271 NA non-coding downstream 769833 14466704 ~ 14467744 (+)
G70286 NA non-coding downstream 1482974 15179845 ~ 15180820 (+)
G70378 itm2b,LOC108430053 non-coding downstream 1653771 15350642 ~ 15430852 (+)
G70409 NA non-coding downstream 1753907 15450778 ~ 15451268 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 5627 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 443083 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 3542902 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 3686167 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 6212255 7464503 ~ 7482560 (+)
AMCG00014456 NA other downstream 492693 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 605576 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 1525043 15221914 ~ 15242333 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 1978760 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 2432608 16129479 ~ 16139032 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G51569 NA non-coding CI01000009 null 3287328 ~ 3290810 (+)
rainbow trout (Oncorhynchus mykiss) G1773936 NA non-coding NC_048586.1 CM023240.2 8820854 ~ 8826155 (-)
eurasian perch (Perca fluviatilis) G125825 NA non-coding NC_053123.1 CM020920.1 20958707 ~ 20959962 (+)