G71136


Basic Information

Item Value
gene id G71136
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18688548 ~ 18692633 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU88954
TCGACTGGAGAGTTTAAAACCAAACTAACTGGCTGACACACTTCAAATTGGCTTCATATTGAAATTGATTATGGTAATCACTGGTATATAATAACATCTCAGTTTAGCCTTCCACTTTAAGAATCAATGCACTATAAACTTGGGAATACTGACTGCAAAATTACAAGTTACAACAATAAGCTGTACCTTACTTAGCTTCTCTTGCAGCAGATCAATATACTCAACAATGCGAGGGTTGactatcatttttattttatttaaagaaatagaaaaaaaacaagcaaacaaataataatctaaaaagACAACACCTGGTTAGTTTTCTaattacaataaatcaatatatagaGCTATAAAGTTTTTGCAAAACTACCTCATCAAATAGAACgtacaaattgaaaacaaaacaaaaaattgaggaaagaaattaatttgaacGTGAAAAGCTGCAGAGACTGTTTTTCCTATACAATAAGCCAGGGGTTTCAGTTGATCTCTTAATTATTAAGGCTTATGGGACACTTAAACCATTAAGCAATGCTTTGGAGAATAATAGACGCTGGCATGCAGAGAATTGTTAAGAAAGGCAACAATGCTATCATATTCCTGATGAAGGAAtgtgtttgcatatttatttccattaaaaggaGGACTCTTCACTGTGAGCCTGCTATGCAGCTGTGTTctggacctttttttttttattcttcaagGCTGGGAAAATATTCGTAATCTTCGAAGTCCTGTACAAGCCAGGCAGAGACAGCTGGGCCAGGGGTGGAGGAGCTCAGCGGGGCAGGACTGTCATAGCGAACGGGGGCAGTGGTGGAATCTGTACAACTAGTTCTCCGCCTGCAGTTACATATTCCTTGTCCAtgcaatatacaatacacacataacttttgaaaaataatcctAGTTGTATTCCCCTGCCTTTGTTTTCTGAAAGCCTCTTTAACTTTTCTGCagacacaaatatacatttctgttgtatGACATCTGAAAGCGGTGATGAATGGTAAAGAGGTTTTAGTTAGCCAGAAAACCTGAGTATATCACTAGACGGTTCATTGGAAAGAAGGGCATAATCCCTGATGGCACCCATGTAAAGAGAAGCACTCTGGTCCCGCTGTTCACACAAGCAGTCGATATACTGCAGAAGTCAGCCCCCTTAAGGCAAAAAGCATGCTTGCCTAACGTGATTAGCCGAGTGGGAAAGCATGAGAAAAACTTGGCAAAGTCAAAGGGGAAGCTGTCACGACTAACCCTATTAATCACCCCAGTAACCCCACATGTCTATTAATGAAGTGCTATGAGACCCTTACACATGCTTTCTTGTGAAGATGCCAGAAGTTTGGAGGTTCGTCGGTCCCAAGTGCAACATGTTCCTCTCCACATCGAAAGAGACCGTTTAGACAGGCAGAGAGATCTCACCGTGCAcgtcttttaaaatgatataatacGTGCAGAACCGAAGGAGTAAAGTCAGGAGGGCATTGAAATTAAAGTCAGTGTGAGTACGAATCTATAAAACAAACTGGTGTCCACTGAAGAATTTCCACTCATTCTTAGAACTGTGGTCTTTAGTCACTTCCTTTTAGAACACCATGGGGAATTATATGCAAATTTCAATCACACTTTCTAGAAATAATTTCCAATATAAGCAGTATTCTCTTTTGATCACATGTCCCTTTATACGTgtgatttgaaataattattcccAGGTTTAACTGATTCCACCCTTCTCTTTGATAAACTATATGTATAAAGTCTACCACCTGACTAAGGAATAGAGGGCCAGAGGTGTAGGAGAGTTGCTCATCATTCAATACTTCACTAGCGACCAACAATTAAGCTTCAGTGCTCGACCTTCCTTCAGTCTAGATCAACAAGTCTTTCCAGATGCggattttaataaaacaaataggacACCCCATGCTACAAGGACTAAATGAAGAAGACAATTATATAAACCAACTATAAAATATGATCCATTATTCATTACTGCAAAACATATTGGCATGGCTAACAAaacatctgccaataaatatatttagtcaTTTCTCAGTATTATAAAGACTTATTCCATTcttaaactttttttccctctatgTACAAAAGGCATTTACATGAATTATATCCAGCtgagttctgggcaccacatgAATAGATTTGCTTCTTGAAAGCTGAAACTTCCCCTGCGATAGAGAGCAAACCAATAATCCAAATAACACATTACATCACCTGTTTGAACAATCACACAAGTCCCCCATAAGCTGATGATTCTTCCACCACAAAAGTCAACATTTTGCAAAGATACCAAGCTGTCACATTATGAGGATTATCTCAGAAAACACCCTTAAATACCTATACAGGGGTTTAACTTCCTTCAGATTatattcaaaaaaaaaaaatcagtttgttcTATGGAGATATGTTAGTGGCCCACACTAAAATACATGACCTATGCGTCTAATATTTACAAATGACCAGTTTAATCTCATTGAACCTTGGACAATGCTCAAATTGGAGATTCATACTAGTAGGAATTCTGCCAGGATGTTGTTTAGGGTCTTACTCAACATTTACACCCCAGTTGCTACTGCCTTTTTTGGTGTCCTTTCTTCTAATAAATGAGCTAATAATGACTCACGCCTAAGGCAACGTAACCACCAAGAGTCGCTTTAAAGTGTTGTTCTGGACAGCTGGAATCAGACAGAATTCAAGGATGAAGTACGGCGATACATCACGGGCActgctgtattttgtgtcaCAATCTCTCACAGTGCTTTCCCAAGAGTGGAAACTGTCTCGTTTGCTATGTAGGCTGAGATTCCTGGAGCCCTTTCCCCGACCCTGTGACCTGCTTCTCTACTTCCTTTTCCCGACGTGGCAGTTCTCACATGTCTCTCCACACTCGATGCCGATGTCAGGGCTCTGACCCAGGCAGCAGTCTCCTCCTGTTACAGACAGTGAGTCAGGGAACACTCAGCTCCTGCAAACTGAGCATGCCGACCAAACCGCCCCACAGTCTGCCTCCGTGGCACCGAGTCTGGGCCGGTGCGCACAGTTGTCAAGTCCCCAGACATTATCTGTTATACTGTGTGTCCACTGCAGCGCTCCCACAACAGTTTACAGAATGATACGAATACTTTCCTTGATGTTTGTGTGACTAGTTGTCCAATTTGCTGCTGTTAATATCTGATTGTCTGTGAAATTGATTGCGACAGGACATTCATGTCTTACACGTTTTCCTCTATGGAGGAAAGCCAATGTCCTTGACGCACATTAGTGGAACAATACacaatagttttgtttttccggTGCCGTCATAAAGAGATTCCAAGTAGGTAGAAAACTGTAAAAGACCTGCGCTCATTATTTCAGGAATGTGCCAGATTACGAGGGGGTTTCACTTTgagaaccaaaacaaatctgagcGAGGGCAGATGAGACCATGTGACCATTGGCTACGGCTGCTTCTCGTGTGTTTACTCCAGCCCAATTTCAGAGAGAGGGATGCGTGCTGATTCAAGTCAATCCATACAAGGGCAGCATGCAAAGGTAATCACTTGTGACACAGTGCCTTacaactcacacacacgcatgtcCGTTATCGGGTTACATAAGCACCGCTTCGTAATTAACAGGGTACACTTTCTACAGAGGAATCTGGTGAATTGCATACTCGCGCTCAATCAAGCCGTAGTAAACAAACACGTGAGATCATTGGAAAACGCAGGTCCTGGGAGAGTAGCAATCACTGCAGAGGAAGCAGAAgcacttttttctaaatgatCTCTTATCAGACAACCTGTGTGGTTCTTGTTTCCAGTCCTGGCTCTCTTGAACTATTACTCTGGAATTTGGAATTACTGCAAGAGTATTCCATTCAGAGAGggaaaaaacgaacaaaaaaaaacctcattCACTGGTTTAGCAGCCGCATAACTTGGTAAATGACCTAAACATGACGTGCATCTTAAGTTCATAAATATCACTGAAGCATCACtcttaaaaatacagttcaacTTCATATCATTTGAAGCTAACTAGTAATAAAAGGTACCATAAATTAGCCTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88954 True 4086 lncRNA 0.40 1 18688548 18692633

Neighbor

gene id symbol gene type direction distance location
AMCG00014587 NA coding upstream 14216 18668806 ~ 18674332 (+)
AMCG00014584 NA coding upstream 21422 18662208 ~ 18667126 (+)
AMCG00014581 NA coding upstream 29487 18645860 ~ 18659061 (+)
AMCG00014586 NA coding upstream 49944 18636706 ~ 18638604 (+)
AMCG00014582 wbp4 coding upstream 55858 18626559 ~ 18632690 (+)
AMCG00014592 NA coding downstream 89424 18782057 ~ 18786527 (+)
AMCG00014591 dgkh coding downstream 110773 18803406 ~ 18845971 (+)
AMCG00014596 akap11 coding downstream 160675 18853308 ~ 18878273 (+)
AMCG00014594 NA coding downstream 197139 18889772 ~ 18900200 (+)
AMCG00014595 dnajc15 coding downstream 256680 18949313 ~ 18963043 (+)
G71038 NA non-coding upstream 210520 18477043 ~ 18478028 (+)
G71036 kctd12 non-coding upstream 220213 18465219 ~ 18468335 (+)
G70938 LOC107575789,LOC100846954 non-coding upstream 1037546 17650771 ~ 17651002 (+)
G70908 NA non-coding upstream 1197941 17489826 ~ 17490607 (+)
G70897 NA non-coding upstream 1337596 17349436 ~ 17350952 (+)
G71183 NA non-coding downstream 208592 18901225 ~ 18902161 (+)
G71237 NA non-coding downstream 355325 19047958 ~ 19048172 (+)
G71283 tpt1,LOC106582181 non-coding downstream 525684 19218317 ~ 19222919 (+)
G71362 NA non-coding downstream 1232269 19924902 ~ 19925198 (+)
G71378 NA non-coding downstream 1493981 20186614 ~ 20186966 (+)
G71004 NA other upstream 414188 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 1201498 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 2219339 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 2549516 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 3002649 15675631 ~ 15685899 (+)
G71525 NA other downstream 4162709 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 8212244 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 9142870 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 9176070 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9609740 28302373 ~ 28304073 (+)

Expression


Co-expression Network