G71174


Basic Information

Item Value
gene id G71174
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18850724 ~ 18851111 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU89001
CCAACACATCATGAAtgcattcagttttatttaggAAGGAAGATCTTAATTGGTAGCCTTTACTTTAAGGCATCtcaaaatgtacaacaaaatCGAACCACTGATTTCAgcagaatacaaaaatacacatctcAGTGACTTCCCCACAGTAATAAATAGGTATTAACCATGCATTctacaataaaaaaggcacagaAAACAGTCACTTAGTAGTCATAAAAATTACTAACTACTTTACCAAAGTCACCCAAATATCTATACAAGTAACTGTAACATTATATTCCAAAGGTGAAAACACGttaaacagttttgtttcttaaaacgTATGCAATAAATACTCAAAtatcgtatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89001 True 388 lncRNA 0.28 1 18850724 18851111

Neighbor

gene id symbol gene type direction distance location
AMCG00014590 vwa8 coding downstream 73116 18776776 ~ 18777608 (-)
AMCG00014589 vwa8,LOC107579031 coding downstream 84064 18720805 ~ 18766660 (-)
AMCG00014588 vwa8 coding downstream 141315 18696075 ~ 18709409 (-)
AMCG00014585 NA coding downstream 206054 18639812 ~ 18644670 (-)
AMCG00014579 mycbp2 coding downstream 293436 18489550 ~ 18557288 (-)
AMCG00014593 NA coding upstream 81026 18932137 ~ 18946921 (-)
AMCG00014597 NA coding upstream 120325 18971436 ~ 18999017 (-)
AMCG00014601 tsc22d1,LOC107551985,LOC107713726,LOC107688650,LOC107748883 coding upstream 263256 19114367 ~ 19122826 (-)
AMCG00014602 tsc22d1,LOC107713726,LOC107551985,LOC107748883,LOC107576221 coding upstream 308818 19159929 ~ 19162787 (-)
AMCG00014600 NA coding upstream 323571 19174682 ~ 19184193 (-)
G71160 NA non-coding downstream 163378 18686498 ~ 18687346 (-)
G71157 NA non-coding downstream 181069 18668801 ~ 18669655 (-)
G71133 NA non-coding downstream 186093 18664264 ~ 18664631 (-)
G71016 NA non-coding downstream 519624 18329197 ~ 18331100 (-)
G70954 NA non-coding downstream 846701 18003810 ~ 18004023 (-)
G71179 NA non-coding upstream 23494 18874605 ~ 18878253 (-)
G71284 NA non-coding upstream 340274 19191385 ~ 19191632 (-)
G71290 NA non-coding upstream 361533 19212644 ~ 19214404 (-)
G71291 NA non-coding upstream 363503 19214614 ~ 19215246 (-)
G71292 NA non-coding upstream 365102 19216213 ~ 19217037 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 828629 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 1229573 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 1388434 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 2112847 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 5716973 13087608 ~ 13133751 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 350692 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 366611 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 3374813 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 8434309 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 8484584 27335695 ~ 27369527 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G151759 NA non-coding CI01000029 null 749986 ~ 750982 (+)
eurasian perch (Perca fluviatilis) G128158 NA non-coding NC_053123.1 CM020920.1 30456134 ~ 30457858 (+)