G71596


Basic Information

Item Value
gene id G71596
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 24332431 ~ 24333297 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU89505
CTTGTGCTAAGGTGCATCTAGTGCAGATAGTGAAGTAGATTAGCACCTACTGCCCTAAGTGCTCCTTCTGGCATAAGGGGCTGTGATCTGCATCCAGCAGGATGAAGACccgttttatttgtatttatatttttgcagttCTCTGCTAGTTTTGCATAGTTGCACTACAAGAAAAATTGAGTTGTGCAAATCTATGCAAAACTGATGGTGGACTGCTTTATCTCCACCTGTTGTAAATTATAAAGTTGGACCAGGGGTATTCATTTGGGAAGTTTTTTGGCTGTGGATGTGATGAATCTGATTAAACTTCAGGTGAACTGATGCTTAGTTAATGCCCTGTGGATGGTGCCTGATGAGTTTCAGCAGTATTAAAGTGCTTATAGTGCAGGTAGTTTTTATTGATCTACTGCAGTATGAGCACTTAAAGTACTTCTAGCTTCAAGCGACGGACTTTTGTAATGGTCACTTGCGCTCGCTGCCACTGGTCTCTGGTTAGTTTTGCTGGTTTGCATTCAGCTTTAACAGTACTGTTGCTGTGCAAATCCATGCAAAACTGACCATAGCAGTGAACATTATCGGAGTATTGCTGTATGCAGGAGTCCCTTTCTGTGCAGGTTGGGATGGGTGGCAATGCTGTTTACTTGTAAGGTATTGCACTTGTCCCGGCCTGTTGAGGACTGGGGGAATTTTGCATCGGTTGTTTGTGCCTTTAATTTCtcttctgtaaaatgttgggaATTGTCAATACATCAGTTTCACGCAGACCCATTTCATTCTAGTGGTTTGTAAATTGttcatgtaacttttttttgtgtgtgtgtatgttctgCAATATATCTGAAATAAAGACTGTTTTTCATGAAACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89505 True 867 lncRNA 0.41 1 24332431 24333297

Neighbor

gene id symbol gene type direction distance location
AMCG00014632 nfip2,LOC107750051 coding upstream 2068431 22247781 ~ 22264000 (+)
AMCG00014624 NA coding upstream 3665251 20646339 ~ 20667180 (+)
AMCG00014619 NA coding upstream 4259361 20024521 ~ 20073070 (+)
AMCG00014618 NA coding upstream 4310737 19959589 ~ 20021694 (+)
AMCG00014617 NA coding upstream 4488389 19843152 ~ 19844042 (+)
AMCG00014635 NA coding downstream 49470 24382767 ~ 24385815 (+)
AMCG00014636 LOC108414264,LOC103139365,LOC102217784,LOC103461949 coding downstream 358989 24692286 ~ 24759297 (+)
AMCG00014638 NA coding downstream 555236 24888533 ~ 24897009 (+)
AMCG00014637 NA coding downstream 594734 24928031 ~ 24937965 (+)
AMCG00014643 NA coding downstream 753717 25087014 ~ 25102638 (+)
G71584 NA non-coding upstream 423782 23908385 ~ 23908649 (+)
G71581 NA non-coding upstream 626997 23705163 ~ 23705434 (+)
G71574 NA non-coding upstream 735108 23597118 ~ 23597323 (+)
G71557 NA non-coding upstream 967429 23364760 ~ 23365002 (+)
G71518 NA non-coding upstream 1676817 22655358 ~ 22655614 (+)
G71598 NA non-coding downstream 190348 24523645 ~ 24532961 (+)
G71662 NA non-coding downstream 749362 25082659 ~ 25082878 (+)
G71670 NA non-coding downstream 775859 25109156 ~ 25109378 (+)
G71725 NA non-coding downstream 1200045 25533342 ~ 25534154 (+)
G71763 NA non-coding downstream 1372161 25705458 ~ 25762742 (+)
G71525 NA other upstream 1476785 22855342 ~ 22855646 (+)
G71004 NA other upstream 6058071 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 6845381 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 7863222 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 8193399 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 2571580 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 3502206 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 3535406 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 3969076 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 4463752 28797049 ~ 28837910 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000048_01357896_01360700 NA coding CI01000048 null 1357112 ~ 1360744 (+)