G71763


Basic Information

Item Value
gene id G71763
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25705458 ~ 25762742 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU89720
ATTagattttatttctcttaatCACTTGCAAGCTTACAAGGAGTTCAATACCTTGGTGTTTTTAATGACATAAGCAAGGATTATATACAGGACTATAAATTGTCAGCAAtgttacagaaaatgaaatttacacttttttttttattagcatcTGTAATAAGTATcccatcattaataataaatgtcataAAGGAccagatttttgtttattctgtacTGCAATACTTGCTCTTTACACACAGTTACAAAAATATTGGATTTTGTAAAATTCTTTATTGATTCATTCCATACAATATAACCTGTGCTGAAATAATGCATCCTGATGATCTCACTACTTTATTGCCATATTTGCAAAGGTACAGTAGCAACAGTGTAAGGTATGACAACACAAAATGATGGCCTCAAGTACcaaattttcttttaaataaccaATAAACCTTTTACAAAGTGCAACACAGAGATTAAGAATTAAACTGGACAGACTCCACAAGGTgcaaattacaatacaaaagagaagggcaggggaaaaaaaagaaaaataaagattcaggggtcaaaaaaaaacatggcactTTTTTCCACATGGGACAAGAGTATGATGGGAACAGATGCTTGGTCCGTTTGAAAGGTATGTGGTGCCTGTTTCACACACCTCCACTGAAGGGGACACTACCAAGGcaggaaagaaaaatggaaatctTTTCTTAAACTGGGAAGAAGGGGACAAAATCTTGTGTTATAGAAAcatcattcaaatataaaaccaGTAAGCTGAGTGTGTCCCCAGGTCTCtgctgcgtgtgtgtgcagggaCTGTGAAAGTGTGTAGGAAACGAacgcaaacaaaaaaatataatatcgGAAGACTATTTTGGTGTCTCCCTGATACTTCACAAATATTttagggaaggaaaaaaaaaaaaaagttgaccAAATTATAATTACCAGTGTGTTTGTTATTACCCAAACTCCATTGACAGAAATCAATAGCGCAAACTAAAACAAGCAAAGCGGTGTCTTTGTTTATTGACAAAGCAAAACGCTGTATTGAGTGCCTTCTGCAACTAGTTAACATACTAGCATTCATAGGTCCtcctccaaaacaaaaaagtaagaTCCGATTTACTATCCTGTTCTGAAAATTAGACTTTCCCTGTATGCAGGCCACCAGGAATTCTcacactttctttaaaagctAAAACATGCACTTAAAAATGATTGTTTCCCCCAGACGGAAgattcaaacaaaatgaaaccaacTAGCTTTACAGTTTTATAGAGTGACAACCAGTCTAAGTGTGTCTTCCTccatttattaatcattattgcCGCATACACTCTGTTGTCTTGATAGCTGCAGGGTTCATACtactaaacaaaaaactaagcaaaaaccaacaaaatgaCTTCACCAAGAGTTGTTTTAAGCTCTGACTTCAGGCCCCACTCTCTAATTGTACAGTGGATGGTGATAAGGCCAGCTCTACGCAACACTTGCCCCTGGTACTGTGGAGTGCTATAACGCACACCACAAACACGGGTTCAGAGATGCCAGAGATACCTCACGCAGACGGGACTCGCAATGGtctggagggatggagggagtcGAGAGGGGGACAGCAGCCCTGCCCTTCCCAGACCCGTGTTTTTGCAGTTGATATCTGCACTCAAACTAAAAGCAGCCAGCAATGGTGGTCCAAGTGCCACTGGTCCACTGTTCATGTGCCACCTTATGTGCTCAGTTTCTACttgaaagcaatacaaatttaaGGACATCGGCAtccattgcatttcattttaaagtcaaGTTCGTACAGTTACATTTTCAGATCTTTACGACTTCTATATTATACCACTTACTAATTTCTTATGGctactttatatttatatatataaatatatcgcAAAAAAAGGCAATTCTTTTCAGAGTGCAATTTCAGCTGTTTGTTCCACTATTTAATTCGATTAACCAGATAAAATATCAGTCTTGTGGCAATGAAGTCTTAGAGGAAATTTAAAATGACTGCAGTGTAAATATTAAGGGCAAAGTGATCCCTGCCACTGGTGctagtaattcatattttataattttagtaAACCATTTTTTCCAGGATTCGTTTCACTGACCTTTGACACAGCAGACAGAATGGAAAAAAAgcataagacaaaaaaaaaaaagacagtatCAGTGTAAAGCAAGTGATATCAAAAGTGAGCGCTGTTTTCCAGGACAGAATACCAAAATATAAACGGGCATATGCAGTTTGAAAATCCTCCGCTATTTCAATAGCAAATTAACagcaaaaactatttaatttaaactttaattggcaaatcaaatacaaatccTATTGCACAAGGAAGTCTGTTCACAATAATAAATGTAGGACCAGGTATGATgtctggaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaatgaaagaaagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89720 True 2460 lncRNA 0.36 2 25705458 25762742

Neighbor

gene id symbol gene type direction distance location
AMCG00014655 LOC107559785 coding upstream 6530 25660345 ~ 25698928 (+)
AMCG00014657 NA coding upstream 74604 25608988 ~ 25630854 (+)
AMCG00014654 kpnb3,ipo5,LOC107677849 coding upstream 112891 25575240 ~ 25592567 (+)
AMCG00014652 NA coding upstream 131450 25565157 ~ 25574008 (+)
AMCG00014653 rap2a,LOC101166017,LOC106512668,LOC105907999,LOC105933629,LOC100695037,LOC103391592,LOC106582448 coding upstream 174609 25522226 ~ 25530849 (+)
AMCG00014661 gpr18,LOC107740919,LOC107681324,LOC107600424,LOC107748622,LOC107668869 coding downstream 171739 25934481 ~ 25941543 (+)
AMCG00014660 tm9sf2,LOC106574826,LOC107705039,LOC107719731,LOC107654273,LOC107556717 coding downstream 273691 26036433 ~ 26052543 (+)
AMCG00014665 NA coding downstream 323117 26085859 ~ 26123768 (+)
AMCG00014664 zic2,LOC106586042 coding downstream 405719 26168461 ~ 26172474 (+)
AMCG00014667 pcca,LOC107719738,LOC107707835 coding downstream 441141 26203883 ~ 26244458 (+)
G71725 NA non-coding upstream 171304 25533342 ~ 25534154 (+)
G71670 NA non-coding upstream 596080 25109156 ~ 25109378 (+)
G71662 NA non-coding upstream 622580 25082659 ~ 25082878 (+)
G71598 NA non-coding upstream 1172497 24523645 ~ 24532961 (+)
G71596 NA non-coding upstream 1372161 24332431 ~ 24333297 (+)
G71784 NA non-coding downstream 7467 25770209 ~ 25770489 (+)
G71817 NA non-coding downstream 189491 25952233 ~ 25959702 (+)
G71826 NA non-coding downstream 248057 26010799 ~ 26011000 (+)
G71859 NA non-coding downstream 468477 26231219 ~ 26231565 (+)
G71963 NA non-coding downstream 1189554 26952296 ~ 26953253 (+)
G71525 NA other upstream 2849812 22855342 ~ 22855646 (+)
G71004 NA other upstream 7431098 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 8218408 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 9236249 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 9566426 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 1142135 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 2072761 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 2105961 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 2539631 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 3034307 28797049 ~ 28837910 (+)

Expression


Co-expression Network