G71817


Basic Information

Item Value
gene id G71817
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25952233 ~ 25959702 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU89783
TGCCCTTGTGGCCGAGCAGATGAATGATGCCAGGTGTGCTGTTCCTCTGGGGCAGCTCTGGGTGTGAAGTCTGTCCTGGGAGGCCTGTCTTAACATGTGAGAGCAACAGGGAGCACAGGATTTGAATGCAGCTCCCTGGGGCTGAAGAGGAGGGCCAGGCTGAGCAGGAGCAAGTATTCAGAAACACCACAGGGCTCATCCTCAGGCTGAGCTCAGGCCTCCAGGGCTCAGTACGTCTGTCTAGGATTGATTGGAGAATGGTGGTCTGGCTAGTAGTTCCTCTGGTGCTGTTGTCTCctttttgttccatAGCCATTCCAGTTTAGGCTGTGTATTCAGCAGtaatgctgaaaggtgaacttccgtCCACTTGTagataagtaaaaaaaaaaaaacaatcttagtgcattttaattccaggctgtACGGCAACAAATGGTGAACATTTAGATATGGGgtatagactttctataggctcTGTATAACTCCACATTCGAGAATTTGTTCTAACCTTGTCTCATattaatattcagtttttttatttttttatttggtccTGTGGAATGGAATTTGaggtgtatacacacacacacatgcaatacatccatccatccatccgtatacatatatatagtctatatataGTGCCCTTTCACCCTCACTCTATTCTACCATTCCATATTTTGTGAGCCTTTACTTTCCAAATCTGTTTTGATCTACCATCTAACATCACTTTCCTAGGGTAGGAGAGATTTGTAAGGGTTATCAAAGACAGGTGATAAGGCTCTTTATTGAAGATACTCctttcacattttcaacattaaCAATTCATGTCAATGAATGTCAAACAATACAAGCAGCACTAGTCCTTAGCTGAACTGTTTTAATGAAACTATCACAGTTTTGGTGTGTATGGATCATGATAGTTTCTCCACCTCGCTATGCATCTCCTGCATTCTGTACAGTGTGCACAGCATCATACAATTAACgaatcatattttaatcttaGTTACCAAGACAAATAGAATACACTGTTGCCAAGACACAAGTTCCAGTTTGCCGTTTCAGAAGCTACCAAGTGAAACTCACCTGGACAGTTCGAACAAACGTTAAAAGTTGTGGTTACAGCTTGTATGCCAATGCAACTCCCATCCTTTGCTGATTTGTTCCTGGGCAAACCTGTATTTACTTTCAGTTTGGAAAGTACAGGATGTGACAGTAATGTTTcaattatacttaaaaaaattataatgccACATAGCATGATTGCAAATGTTTTAACTTCATAGCTCAGCAGggttcatatttatttcaacaggAAATGCATGTGCTTAAGGAGTTTAGAACAAAcaacttttaaattatgttcaaatgaagaaaatatatatgtaaaatagcTGCAATAAGCAATTTTGTTCACTGTCAATTAATTATGCACAAccatatatttacaaaacaatatataatatatacatttattagaaAAAAGACACTAGTTCCAATTACAGTAAAATGGAAACATTCAGTAGCATGCTTTTAACGGCACCAGTATGAATGCCCATTAATTCTATTACATACtaatgtgtgtcagtgtaagGCTACCATATCCAGCATCAGGTACACATTGATTCCGAGGCTGCGGATGTcactgtataaatgtataataaacacaatttacacaTTTGAAAAGTCTTTATATATGAGAACAATCTCTTTTTATactaaaatgcaattaaacacaattatcaGGTCTATGGCAGGTCTATTCTAGCTTAGGAAGaatgtataaattacattttcacgTTTTACAAAATCATTCAATATAGTATATGATggcattaaaaaatagactttaTGAAGGAATAACacattttagttgatttataACCATGCAAGATAAAGTATTGGcagaaacattttgtaatataattctTACTTCATTCATGGGAACACTTAGTTCCTCTAAAACGTCTGTATTAATCCAGAGCATTGTTTGAGTAAATTATGTATCTAGgtcaattaaacacaatttggAGTGaaggcatttttttaaattgtagcaACAATTTACCAGTCTTGGCCTGGAAACTCAGTGTATGATGGTTACAAGTATTTAAAACGACTCACTCTTTTGCAACTGTTGCAACATAATTCTTGTCACAGCATTGTTTTGCATTAGTACGTTTCAAGGAATACTTGAATCGTAACTGTTTTCGTTCTGTGACCAGGATGATTCAGTGCTAACATGCTAATCTGTTATCTAAGTGCTAAAGTGGCTGGTCCCCTGGTAGAAGAGCTAAGAAAAGtgttcacttttttatttggttatttcCTCTTTAATTATTACtagttttatttacacatttattatttgagaaaatagaaaaattaaCCACACTCACCCATATCTCTTCAATGTTGAGAAATGTTTTGCTGAGAATCTTACAATCTTATCAGAAGTGCAAAACATCCTCTTAGAAGAGTGGAGTGAAATGACATGTGCAACTAAATGTCTCAAGATCTGAAACTGGCCAATGAATTCACATTCACTGAACTTTACACAGTATGAAAGTTagattgaaatgttttcaacacAAACCAGATATAACTCTGAGAATAAGTATTTGTCACGTCTGTTCTATAATCCATTGATAGATCTTCTCTCTAGAAAAGTCAATCTCATGTgcatcctgtgtttttgtgcatgttATTTAACCCTTGCATagattcataaaaaaaagttttttgagAACACTGATAGACTGCCCAAGACAACTCTGTAGGCTCTGTCCTTcccaaatataatatatatattttttttcctcacccATATCCAGGAGTTTTGGATTGAATCACTGTGATGTGAATGGCTTACTCTGTACAGTTTAAATTGTGCTCAGCTCCCACTTCAGTGTGGCCAGTCAATGtggtcagtgtttgtttttgttactgtttaAGTGCATTGAAACTTTGTTGTGCTCGATGATATCTCTTGAGGAACAATCCGGAGAAGTCCTGACCACACTGGAGAATGACACACTGACCTGCCGTTTCATCAGCTTCATGATTTTCCTTTTGTAGCCTTTGCaggcaaagaaataaataaaagggtcCATGCAGCTGTTGAAGTTCATCAGACACACTGTGAAATGCAGGGACACCTGAAATCTGTGCAGCTCGGAGCAGTCGGGCGTATACAGCAGTTTCTTAACCATGAACTGTAAGATGTCAATGTGGTAGGGACTGAAGCAGACCACAAACACCAGGATGACGAAAAAGATCACACTGATGGCCTTTTTATTCCTTCCAGATTTCTCGGTGAGGTGGTTTTGCTTGGCTGTGGAATAAAGCTTCCAGCATAATCCAGAATAGCAGACTAATATGGTTACCACTGGGATAACATATCCTAAAAACACAGCGCCTATCAGCATAAAAGGCAGGTTAGGCAGGTTTTCGAAATTTGGGTATTCCATGCAGGTTGTGTGTCCGCCTGCTTCTAGTTTCGTCATGGGCATGGTGAGCAAAGGAAGCGTCTGAACCAGTACGATGAGCCACACGATGATGCAGATGTACTTGACATTTTGAACTTTGCGGAAGCGGCTGTAGCGCAGGGGCAGCACCACGGCGATGAAGCGGTCCACACTCAGGCAGGTCATGAAGTTCACCCCGGCATAGGTGTTGATGTAGAAGATAAGGGCAATGACTCTGCACAGCGCTTCCCCCATGATCCAGTCGAAGCCCCGGGCATAGTAGACAATGCGCAGGGGCAGGGACAGGGTGAAGAGGATGTCAGAGATGACAAGGTTGGTGGAGTAGAGGGTGGTGGAGTTAATCTTCTTCAGGTTAGGCCTGATAACGTGAAGGGCTAGGGCATTGCCCAGTAGGCCCACGATGAAGACGATGGAGTAGTGCAGTGGCATGAGGATCTTGGCAGTACCGCGGTGGTCATACAGGTTGGTACAGGTCTCATTGCTCATGTTGCTGCTCAACTCCATTTGTTTCAGCAATGCAGGGTTTTGCAT

Function

GO: NA

KEGG:

id description
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU89783 True 4022 lncRNA 0.39 3 25952233 25959702

Neighbor

gene id symbol gene type direction distance location
AMCG00014661 gpr18,LOC107740919,LOC107681324,LOC107600424,LOC107748622,LOC107668869 coding upstream 10690 25934481 ~ 25941543 (+)
AMCG00014655 LOC107559785 coding upstream 253305 25660345 ~ 25698928 (+)
AMCG00014657 NA coding upstream 321379 25608988 ~ 25630854 (+)
AMCG00014654 kpnb3,ipo5,LOC107677849 coding upstream 359666 25575240 ~ 25592567 (+)
AMCG00014652 NA coding upstream 378225 25565157 ~ 25574008 (+)
AMCG00014660 tm9sf2,LOC106574826,LOC107705039,LOC107719731,LOC107654273,LOC107556717 coding downstream 76731 26036433 ~ 26052543 (+)
AMCG00014665 NA coding downstream 126157 26085859 ~ 26123768 (+)
AMCG00014664 zic2,LOC106586042 coding downstream 208759 26168461 ~ 26172474 (+)
AMCG00014667 pcca,LOC107719738,LOC107707835 coding downstream 244181 26203883 ~ 26244458 (+)
AMCG00014668 pcca,LOC107654247 coding downstream 358329 26318031 ~ 26335361 (+)
G71784 NA non-coding upstream 181744 25770209 ~ 25770489 (+)
G71763 NA non-coding upstream 189491 25705458 ~ 25762742 (+)
G71772 NA non-coding upstream 203825 25745803 ~ 25748408 (+)
G71725 NA non-coding upstream 418079 25533342 ~ 25534154 (+)
G71670 NA non-coding upstream 842855 25109156 ~ 25109378 (+)
G71826 NA non-coding downstream 51097 26010799 ~ 26011000 (+)
G71859 NA non-coding downstream 271517 26231219 ~ 26231565 (+)
G71963 NA non-coding downstream 992594 26952296 ~ 26953253 (+)
G71995 NA non-coding downstream 1067073 27026775 ~ 27027272 (+)
G72072 NA non-coding downstream 1515362 27475064 ~ 27479444 (+)
G71525 NA other upstream 3096587 22855342 ~ 22855646 (+)
G71004 NA other upstream 7677873 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 8465183 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 9483024 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 9813201 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 945175 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 1875801 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 1909001 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 2342671 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 2837347 28797049 ~ 28837910 (+)

Expression


Co-expression Network