G72139


Basic Information

Item Value
gene id G72139
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27836339 ~ 27837927 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90167
CACCGATAGCTGTTGCTGCAATCTTCCCCACCCTCTGAAACAGGTACCCAGCACACGCCAGTCACTCCTCCCATCATAATCTGAGTGGCGACCGAGTACTTCTCCGCAATAGGTCCAGAATTCTGCCCAAACACGCGGCTCCACCACTGATGACGCCGGGCATAATCTGTTAGGTCCACAACCTCATACGAGTCATCGTCACTCTCTTCTTTATTTGGAGTGAAAAAGTACACATatgagttttgtttctttgatggCGGTTCCAATAAGGACAACATTTACATGGCAAGACCCTTCAGGCTGAACCTCTATGTCTTTGGACATCAAAAGATAATGTAAAGCATCCTAACAATTATCCAACttgaaaactaaaactgaaaacttCACTATAGATGTTTagcagaaaacaagaaaagttaaaaaaacaaaaaaaacaacaacaacaaacagttCTGCTGTATAAAGAATGAATCAAATTCTCTTTTGGgtgtttaaacaataaatataaccTACATAGAAATACAAAGACTAGGGTGACCAAAGAGATATCTTTTAAAGGCTACTTCTCTGTACTGATGAAAGTAGAACCCTTTCCAATCTAGAAACTGATTTCCACCACAGCAGGGTTTCAATTTCAAAGGGCGTTCTGCAGCATCTCTTAAGGTGAACGCTGAGATTGAAAGGAGGGAAAGTGGATGAAACCCATTTTAACTTCAGTCACCTTAAAGTTAAGATTCAAATTGAACTGGGTCACACATCTACAATGATGCCTTTCAGGTTGACTTGGAActcagtttaattaataaacacaaaagacagCCTGGAATATCTTACATTTCTCCACATTATCTCCCCTGCCcacatgaataaatagatatataaatcaggtttcattattgtaatttacataaaCACCACCAACAGtaaagtattaatatatatacttcCAAGAACCTGGAGTTCATTTTATGAATTCATTTATTCAATgcctttaaatgtgttattaatttttttaatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90167 True 1019 lncRNA 0.37 2 27836339 27837927

Neighbor

gene id symbol gene type direction distance location
AMCG00014707 kdm6a coding downstream 73926 27717966 ~ 27762413 (-)
AMCG00014702 ccdc80,LOC107695464,LOC107756780,LOC107673676,LOC107748150 coding downstream 327197 27492028 ~ 27509142 (-)
AMCG00014697 atg3,LOC107752093,LOC107659953 coding downstream 353659 27470289 ~ 27482680 (-)
AMCG00014696 NA coding downstream 369485 27441353 ~ 27466854 (-)
AMCG00014694 NA coding downstream 395410 27431251 ~ 27440929 (-)
AMCG00014712 NA coding upstream 223701 28061628 ~ 28204961 (-)
AMCG00014713 NA coding upstream 381465 28219392 ~ 28220486 (-)
AMCG00014715 ddx3x,LOC108412429,LOC102776245,LOC107564811 coding upstream 451428 28289355 ~ 28315398 (-)
AMCG00014716 usp9x,LOC108272755,LOC107595873 coding upstream 503224 28341151 ~ 28380053 (-)
AMCG00014717 NA coding upstream 649702 28487629 ~ 28490563 (-)
G72089 NA non-coding downstream 305696 27530296 ~ 27530643 (-)
G72049 NA non-coding downstream 417294 27418816 ~ 27419045 (-)
G71961 NA non-coding downstream 903702 26932268 ~ 26932637 (-)
G71882 NA non-coding downstream 1501339 26334655 ~ 26335000 (-)
G71880 NA non-coding downstream 1512085 26324038 ~ 26324254 (-)
G72146 NA non-coding upstream 18812 27856739 ~ 27861375 (-)
G72280 NA non-coding upstream 740482 28578409 ~ 28578734 (-)
G72305 LOC100136012 non-coding upstream 808568 28646495 ~ 28646811 (-)
G72306 NA non-coding upstream 817639 28655566 ~ 28655765 (-)
G72307 NA non-coding upstream 820150 28658077 ~ 28658299 (-)
AMCG00014692 LOC107756725 other downstream 466812 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 531742 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 5591424 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 8611109 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 8632772 19201803 ~ 19203567 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 491812 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 1551363 29389290 ~ 29398305 (-)
AMCG00014775 NA other upstream 3003596 30841523 ~ 30846800 (-)
G73047 NA other upstream 4425240 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 4617379 32455306 ~ 32555945 (-)

Expression


Co-expression Network