G72146


Basic Information

Item Value
gene id G72146
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27856739 ~ 27861375 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90174
GAAGATTAAGTGATTCTATTCATCTTTATTTGGGGATTTAGGGACACTCATAGCTTGAAGACACAGAAAAGCAAGTTCACAAGCGTACATCTAAAATGTTAACAGCAGGAGACAGTCCTTTGACAGACTCCTTTAATCCTGTTTGCCAAAGACATCTTCAACTAAGATGGGATAGCTGATACCTTTCACTGCCGGGCCTGTGGGTTCTTCGCTCCAGTCTACGTCATACTGAAAACAACAAGCATGGGGACATGGATTAAGGAGGGGAAGGCATGTGAAATACAGCCAGCTGAGGATGAATGGCAGATCCTCGCAGTGTCTTTCTGCACATGGAGCTCATATGTCAGCCTTTTTTCTAGTGTACTCACCTAATACTAAATACCTGCAAAGCCTTTTCAGGTGGCAGTTCAATAACAATACGACAAATTCAAATACCATGGCCTGTACGTGGCAGCTGCTAGGGGAGACACTGTTGTTGACATGCAGGCTCGCGCATAACATTCACTGTGACATCAGTTTCCAGGGATACTAGTCTGGTTTAATCTCAAAACGACAAGAAGCCACGAGGTGTAAAGTTGGTGGTAAAGTTACAGACTACGGTATCCTGAAAGGACGAAAGAGCTAGTGCAGTGTGAAACAAGCATGTGTGAGCATTTCTAGAGAGGAACGGGCTATACACAGCAACCAGAAAGCACTCTGTGAATGGCCCCTGGGTCCCTTCCATCAGAGGCAGCGGACAGAGCAGAAGCGGACGAGTGCCCAGACAGAACGGAGCGACAGCTGGCAACAGCAGCTCAGTGTTGTTCAGCGCGTCCCCAGAGCTTCTCCATAAAGGCATTGTAGTTCACGGTCGAGAGGCCGAgaggtttaaatgtaatttgcaggGCCGAGAAAGGCTGGAGGATGGTAACGCACAGCAcaggaagaagaaagagaagagaaggaaaaagagATAAAATGTTAGCATTTCCATAAAAGGGACAGCCTTGAAACGGATCATTCACCTCATAATAAAGCGAAGCACGGTGACTTCAAAGTCAGGGATATTGTTGCTTCTGCCATAGATGTCTATGTTTTCTCTGTGTTATACATGGCCCATAGCTCTTTATGCACTGGATCTAGACCAAGCAGTGAAGGTCAAGCCACACCCATTCCCACAGGTTGCTGGGGGCACCACTGACACTACACAACTTGTTGTATTTGAAGTGTGCGCTTATGGAGCAGAGATGTAGCTCAAAGACAGCTCTTTcctaaaggagaaaataaatatgcttcCGACTGAGACAAAATCAGAGAGCTTGAGGAATGTCATAACCCTGGTCACCACTCTTGGTTACACACATCTCATTAGTCTTAAGAACAGTGCGTTTCAGTGGATGGAGGGAAGGCAATAAGAATCATGTTTTACCATCCTTGATAAATCTGTCAAAGTGTCCTGTCTCAAAGTCCATAtctgactattattattattttctctttggtCTGAGAACTGAGGTATTGGTGCAAAATATTGgttttaatttgcttgtttGAAACGCCAACATGTAAGTAAGATTCCCCTAGACTGGGTGGAGTATTTAACCCCGACTTCCACATTCAGGAACCTGTCTTTTGATGTAGCGGCTTCGGCAGTTCAAATCTAAAGTCTGACCCTATACACCACATAGGCCACCCATTATGTCTGAGGCCCACAGTTGTTCCTTCCCCCCTGCTTTCTCCACATTCACTCACTCAGAGCTCTGACTCACCTTGTTgggagactgagagagaggggttggTGCTGGATTGTCTCTCCAGTTTATCGCTGACAGGAAAGCACCGTAATCTACTTCTTCTTTATCGTTTGCAAACCTAAACTTTGCTAGGGTGGCTCTCAGAAGATCATCAGCCAATGGAAGTTTGAAGGCCTTGCAAATAGTCCTGGATTTCTGAGCAGACAACAGTCCAGTCCTAAAAACAGGTGATGGAAATGACACAGATCACAGACTGACAAAGCTCAATTTAATTCCCAATTCCATCAAGCTACATGACTATCAACATATTCTTCCTTACTGAGTGACTGTATACTGTGGCTATCAATAGCTAATCAATTCTACTGAATACCAAATATCCAGAGAAAAGTAAGGCATTGCCCCCCAggtaataatataaaagataATTACTATACTTTAAGTGaagttatttaaatttaaaattatatcagTCTGAAGTCaaccatttatttacttttcatttccTAGTTTGAACAATCTAGAGATGTGCAATGTCTTCTTTGTTTGGAAGAAATAGTTAtgatgtatacattaaaaatctCAAAAAGATGCATGGCTAATAAGAAAAAGTGGCAATATACATAGTGACCGTAAATCCAATCAGAGGCTGgtgtaaatattaatgatttattagCAAAGCATGTTTAGATCACTTAGCTGTAATAGCAAGCAACCTTTACACTGAGGGTTGCTGGTTCAAGTTATattcctttttgtttaattactgaattaaacacaatgtcaaaagaaaaaaatacaggacCACTTTGCATTTCCTGCATTTTCATCAATGGTCatgaaaaggagaagaaaacattgataaaatgtgcttcaaatataaaaactgtCATTAATaagacaaaatcaaatttaGATTATCCCCCCCTCAGTTACTGAGCACCGTCACAACTGAAATGTCTGCTTTTATGGGGACTAACACACAAGCAATGATGCAATATGAAAAACTTCCAAAATAAAGAGGAATGTGGTGGTGTCTGAATAATTGTTGAGGGCGCTCTATGAGGTGTGAGAAACAGgattattttaagtattgtttCATCATTTGCAAAGGGTGTCAATAGCATGCATCTCTATTGAGATGGCGGTGTCAACAGAATTGGTGTCTGCCAACACAATGGTGTCTTCTTTATCTTCCTAAAATAAACTGGAATGTGCAGGAACAGACTGACCACGTCAGCTCCTTAGTCGGCCACAAGTCTTCATATGAACACAAAAGAGAAGCTACAGAAAAAGTCATTATTACTGCCCTATAGCTGGCACCTTAGACACAGATAGTGTTTCCAGAGGTAGGATGCCTTTAACTGTATGTTTTgtcatattatttgtaatgtagttccaaattaaaataaaatataaaatgttaaatctcTTAGATCAGAACACAATATTAGTTAATGTACATGTGACCAAGTGTAAAGCACAGTTGACCTTATAACCTAAacctaaactaaactaaatcacCGTTGTGCATTGTGTATTTCTAATCAACACAACATTTTGGTCTGAACAGCTAGTGGAGGGAGTGTTTTGATTGTGCCATgtaaggagaaaagaaaaactattaccttttttgggggggtgggggataatttcttaattaatgtGATTATTTAAGAACTGGTTGACATCTACgataaccatttaaaatgtgtcaacTGCCTACAATAGAAAACGTTAATTGATCCAAATCATCATTAACTTGCATCCCATCCCATTAATACACTTCTATGTTTAGAATCAATAATGCTCCTGTCACAGGAGATATAGCTACTGTGAATATTTCATTAACTGTAGAGAGAGTAGCTAGGAAATAAAATCTCTCaacaaaatcatgttttgtcTTGGTTGCAAACAGACCCGAGGCGACTGTAAAAGACATAGTGCTGTTCTGTACAGCTAAACATGACCTTATTCATTTCCCGTCCTGGGGTTCTTGCCTGGCTGTAGGAATCATCTGTTTTTAATGCTACACTTAAACCACTGTAACTAATAGGCGAATGACTATCTGGCTACACAGAGTCTGGTGTGGTTTGACTGTTTGCAGATTGATGGCAATTTTATTTGGTCTCCGAAACGAGATGCTGGCCTCAGAGATGGTGAAAGTTGAAAAAGGTTAAAGGGAGCTTCAATGGAGGAGTGTTCCTGAGGCCAGGGGACGCGGCGGTACCTGTCTTGGTCATCGTGCACGAAGGAGTCGACCATTTGCTGGAAGCTTTCAAACTGCTTCTTCCTCAGCTGCTCCTGGGCCAGGGACAGCAGGTAGCCCAGATCCGACCCAGGTGTCTCTGGGGAACCATAGTGGCGCCCAACCACCATGATCTCATGCTCAGACAGCTGGTCACCTGCAACCTCAGCCAGCAGGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90174 True 4158 lncRNA 0.41 2 27856739 27861375

Neighbor

gene id symbol gene type direction distance location
AMCG00014707 kdm6a coding downstream 94326 27717966 ~ 27762413 (-)
AMCG00014702 ccdc80,LOC107695464,LOC107756780,LOC107673676,LOC107748150 coding downstream 347597 27492028 ~ 27509142 (-)
AMCG00014697 atg3,LOC107752093,LOC107659953 coding downstream 374059 27470289 ~ 27482680 (-)
AMCG00014696 NA coding downstream 389885 27441353 ~ 27466854 (-)
AMCG00014694 NA coding downstream 415810 27431251 ~ 27440929 (-)
AMCG00014712 NA coding upstream 200253 28061628 ~ 28204961 (-)
AMCG00014713 NA coding upstream 358017 28219392 ~ 28220486 (-)
AMCG00014715 ddx3x,LOC108412429,LOC102776245,LOC107564811 coding upstream 427980 28289355 ~ 28315398 (-)
AMCG00014716 usp9x,LOC108272755,LOC107595873 coding upstream 479776 28341151 ~ 28380053 (-)
AMCG00014717 NA coding upstream 626254 28487629 ~ 28490563 (-)
G72139 NA non-coding downstream 18812 27836339 ~ 27837927 (-)
G72089 NA non-coding downstream 326096 27530296 ~ 27530643 (-)
G72049 NA non-coding downstream 437694 27418816 ~ 27419045 (-)
G71961 NA non-coding downstream 924102 26932268 ~ 26932637 (-)
G71882 NA non-coding downstream 1521739 26334655 ~ 26335000 (-)
G72280 NA non-coding upstream 717034 28578409 ~ 28578734 (-)
G72305 LOC100136012 non-coding upstream 785120 28646495 ~ 28646811 (-)
G72306 NA non-coding upstream 794191 28655566 ~ 28655765 (-)
G72307 NA non-coding upstream 796702 28658077 ~ 28658299 (-)
G72317 NA non-coding upstream 813006 28674381 ~ 28766089 (-)
AMCG00014692 LOC107756725 other downstream 487212 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 552142 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 5611824 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 8631509 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 8653172 19201803 ~ 19203567 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 468364 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 1527915 29389290 ~ 29398305 (-)
AMCG00014775 NA other upstream 2980148 30841523 ~ 30846800 (-)
G73047 NA other upstream 4401792 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 4593931 32455306 ~ 32555945 (-)

Expression


Co-expression Network