G72236 (rpl8,LOC107595836,LOC107748161)


Basic Information

Item Value
gene id G72236
gene name rpl8,LOC107595836,LOC107748161
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28329739 ~ 28332482 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90285
GCACATtcaaaaagttgtttttttttggaacACGTTTTATTATGAAGAGACACTGTAGTTTAGTTTTCCTTCTCCTGGACGGTCTTTGTTCCACGCAGTCTGCCAGTACGACGGGCAGCGATGAGACCGACCTTACGACCAGCTGGGGCGTCCCTCCTGATAGTGGAGGGCTTGCCAATATGCTGATGGTTACCACCACCGAAGGGATGCTCAACAGGCTGGggaacaaagagagagagaggaagtatCCCATGAACACTCACTGTCCATCTCCCATTACAGCTGCACCGGACACTGTTGAAACTCACTGCTTAACACTTTATACAGAGAAAAAGTCTTTCATACTTGAGCTACTGCTGCCATTACCTTGATGTTAACTGATGTATAGAAAAAAAACTGATCTGTTGCATGAAACTTCAGATAAATCCTTAAACTACATCACATCGCAGTATTGTGTTTAAAGGTAGCATTGTAAGCAACGTGCCACAATCGCTCCAGAACACGTGGAGCAGGAAGTCCAGCTGCAGGAGCACACTTACGTTCATGGCCACACCACGGACACGGGGCCAGCAGTTTCTCTTGGCCTTGTACTTGTGGTAGGCACGACCCGCCTTCAGGATGGGCTTGTCAATACGACCACCACCAGCAACGAgacGACAACGGCTCTGTTGGCAGAAGAGATGACTTTCTTGGAGCCGGAGGGCAGCTTCACTCTGGATTTCTTGGTTTCTGGGTTGTGGGAGATGACTGTGGCGTAGTTCCCGGAGGCACGAGCCAGCTTGCCACGGTCACCAGGTTTCTCCTCCAGGCAGCACACAATGGTACCCTCGGGCATGGTGCCCACTGGCAGCACATTGCCAATGTTCAGCTGAGCTGCAAGGGACGGAATAACagcatattattttcaatagaaACCACCCAGATAACTGCACATCCTGGAATTAATGCGAAGATACTACATCCCTCAGGACAGACCAGCCTTAATTACATTCTAAGTAGCCAGTGGGAGCAGACCGTCTGTTACCctttagttttcattcagccACCTGCAGAATTCCTCACAAACATCTTCAGCAGGCCAAAAGATTCATGAACACCTACCCCCACCAATCTTTCCCCATGCTCCACCACGGTGTGATCCCCATTCAAATGAGACCCCGTGGACTCACCCTTCTTGCCACAGTAGATGAACTGTCCGGTGTGGATGCCCTCCGCTGCGATGAAGAGTTCAGTCCTCTTCTTGAATCTGTAGGGGTCCCTGAAGGCCACCTTGGCCAGGGGGGCTCCACGGCCAGGATCGTGAATGATATCCTGGGGGAAAGAAGGTGGGAGTCAGACAAACCGACCAGCATCCCAAAGCACCTACAGCCGGGCACTGCCCTTCCAGACGGACCAAGACCTCTCACCTTCACGATCCCCTTGATGTAGCCATGGCGCTCAGCGAAGTCAATAGATCTGAGCTTGGCAGCCCCCTTCCTGTGCTTGACGTGGGCCTTGAAGACGGAGCCCGCACCTTTTCTCTGTCCTCTGATGACACGTCCCATTGTGCACTGAAGGAGCAGACAGAAAAAGAGCGAGTTTATACAGGATCAAAATAACTAAGTTGTATTGAACTCGAGTAAGGACATGCAAATCCTATAGGAATCCCAATCATTACTTGCCCCCTTTAAcgagaaaataactaaaatattacTTTGATCTTTGTAAAATGGGTTTATATtcgtaaaaataaaatgtgttacagGTTTAGAAACTTCTTCCACATGCACGCATTGCTGGGCCTCATCTCAACTGCACTCATACATGAAACACTACTCTCAGCAGTGCAAATCTATTTAGTTTATGCTATAATGCTACATTCACGGAGCATATAAAGACGTGGAAATGTTGCTCTAAATCATTGCGACGACACGTAATTGCACGTTAAGTGGGAACCAGAACTACGGCTGCCTCATACCGAGGACACACCGAACGCGATACACACGTTAACGAAAGCTACAATAACACAACGAATAGTTACGATAATATATTTAAGGGCAAAGCCAATAAATGAAAGCAGTTCCgtttaaaatgaataacctAAACACGTAGCTATATGCAACCGTGACAGACCCCACTGCTGGTCCTTATGACACACTCAACAATcgcttattttattaaaatcctTCTTCCTAAACACTCATGGAAGTATATACGGAACATACAGTtgttactttatatatacaaagGGCAAATCTGGATGGATGGGATAATAAATACAGAGATTAAAGTCGGATTTAACATGAGATAAATATCCGCCATTCCCCTACCTAAACCCGGCTGTCGAAAAAGAGGAAGTCAGGGGCGCAGACCAGCATTTTCTTCCGGAGGATTCTAG

Function

symbol description
rpl8 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL8 (ribosomal protein L8).

NR:

description
PREDICTED: 60S ribosomal protein L8 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90285 True 2377 TUCP 0.47 2 28329739 28332482

Neighbor

gene id symbol gene type direction distance location
AMCG00014715 ddx3x,LOC108412429,LOC102776245,LOC107564811 coding downstream 14341 28289355 ~ 28315398 (-)
AMCG00014713 NA coding downstream 109253 28219392 ~ 28220486 (-)
AMCG00014712 NA coding downstream 124778 28061628 ~ 28204961 (-)
AMCG00014707 kdm6a coding downstream 567326 27717966 ~ 27762413 (-)
AMCG00014702 ccdc80,LOC107695464,LOC107756780,LOC107673676,LOC107748150 coding downstream 820597 27492028 ~ 27509142 (-)
AMCG00014716 usp9x,LOC108272755,LOC107595873 coding upstream 8669 28341151 ~ 28380053 (-)
AMCG00014717 NA coding upstream 155147 28487629 ~ 28490563 (-)
AMCG00014719 NA coding upstream 161624 28494106 ~ 28494486 (-)
AMCG00014718 NA coding upstream 162025 28494507 ~ 28495026 (-)
AMCG00014730 NA coding upstream 597883 28930365 ~ 28951352 (-)
G72146 NA non-coding downstream 468364 27856739 ~ 27861375 (-)
G72139 NA non-coding downstream 491812 27836339 ~ 27837927 (-)
G72089 NA non-coding downstream 799096 27530296 ~ 27530643 (-)
G72049 NA non-coding downstream 910694 27418816 ~ 27419045 (-)
G71961 NA non-coding downstream 1397102 26932268 ~ 26932637 (-)
G72280 NA non-coding upstream 245927 28578409 ~ 28578734 (-)
G72305 LOC100136012 non-coding upstream 314013 28646495 ~ 28646811 (-)
G72306 NA non-coding upstream 323084 28655566 ~ 28655765 (-)
G72307 NA non-coding upstream 325595 28658077 ~ 28658299 (-)
G72317 NA non-coding upstream 341899 28674381 ~ 28766089 (-)
AMCG00014692 LOC107756725 other downstream 960212 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 1025142 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 6084824 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 9104509 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 9126172 19201803 ~ 19203567 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 1056808 29389290 ~ 29398305 (-)
AMCG00014775 NA other upstream 2509041 30841523 ~ 30846800 (-)
G73047 NA other upstream 3930685 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 4122824 32455306 ~ 32555945 (-)
G73127 NA other upstream 4264980 32597462 ~ 32619149 (-)

Expression


Co-expression Network