G72317


Basic Information

Item Value
gene id G72317
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28674381 ~ 28766089 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90391
TATGggttttgtagatttttttattggcaTGTATACCCCAGATACCTGTAAGACAcagtaggaatacaaaaaagtGAGTAAACAAACTAGTGATAACCTTTACAAGAatacaaaatggtttaaatgctggtcacatgacaaaaacaatcaaacaaacaaatcaaagtcAAGTTCAACTAGTACAAGGTAATACTGCCAAATATATCTGTGCTGTTTTCAATCCGAAGTTGTATTCAAACGCTAGATGGACCAACATCCATCGTGCATGTAGCTGTAGATGTAGATGTTGTATTTTAAGGTGTTTTTCAGTCATGAACTTTAAAACAGcctttgatttttctttattcttttaagGCACTGATACTGCACATGGTATACACAATGCATTAGTAGAATCATCCAACGTAAAGTTTAACAACGTAAAATATCTATGCTATAGAGTTGATACTGATTCTAATCCActgatatatattgaaataaaaggtattttgtAGTTGCTGGGTCCAGAGTAATGCATTACCCGGAGGAGTTACACAACATCAATCAGCTTCTCATGGCAGGCTTTGGTTTCAATGTCTCAACTCTTTTTCCATTCCTACACTGGTTCAGCTCTTTGGTGCCCATCTCTTGACCCCCCAAGACAGACAATTCAGTACTTGCAAACTCACAGGAAATATCCCCAAACTCACACTTGGATTCTCTCTGTCCGTTTCCCTTTTCTTTACCcacattctttcttttctgtcatACTCGGGAAGCAACATACAGCAGATGAAGGGTTTTAAAAAGCAGGTACCGAAAACCATTCATTTGTGTAGTATGTGATCCCAATACACTGACATCTGTGTGATGTGACAAATGACTAAACAGCCTTGACTGAACACAAAGAATGACGCAAAAGCTGACAAAAAGTAATGGTAGCTATGAGCCTAAATCAATCAACACCTTGTAACACTGTATGTGGATAAAACAAGTGGAAAGTGtttgaaatacaaagcaatacaGCCAGACAACCCTAGCAGGTAGGTTCATAAAGCATAACTGTGGCAGTTTTCATTCTTTGTAACTATGCCCCCTTTTGTGGTGTAAAACAGTAGGCATTTGTACTGTACTTGCTTAAGATTGCCATCTGAGTTACaatccaatttaaataaaatacgaAGACTactacaaaattataaaaataaatgcaaaaatactatcaaagtgtaagaaaaaaagaaatcgCACCTTCGTGAAACATGTGCCATTGTAAaaaaaaaagaaa
>TU90392
TATGggttttgtagatttttttattggcaTGTATACCCCAGATACCTGTAAGACAcagtaggaatacaaaaaagtGAGTAAACAAACTAGTGATAACCTTTACAAGAatacaaaatggtttaaatgctggtcacatgacaaaaacaatcaaacaaacaaatcaaagtcAAGTTCAACTAGTACAAGGTAATACTGCCAAATATATCTGTGCTGTTTTCAATCCGAAGTTGTATTCAAACGCTAGATGGACCAACATCCATCGTGCATGTAGCTGTAGATGTAGATGTTGTATTTTAAGGTGTTTTTCAGTCATGAACTTTAAAACAGcctttgatttttctttattcttttaagGCACTGATACTGCACATGGTATACACAATGCATTAGTAGAATCATCCAACGTAAAGTTTAACAACGTAAAATATCTATGCTATAGAGTTGATACTGATTCTAATCCActgatatatattgaaataaaaggtattttgtAGTTGCTGGGTCCAGAGTAATGCATTACCCGGAGGAGTTACACAACATCAATCAGCTTCTCATGGCAGGCTTTGGTTTCAATGTCTCAACTCTTTTTCCATTCCTACACTGGTTCAGCTCTTTGGTGCCCATCTCTTGACCCCCCAAGACAGACAATTCAGTACTTGCAAACTCACAGGAAATATCCCCAAACTCACACTTGGATTCTCTCTGTCCGTTTCCCTTTTCTTTACCcacattctttcttttctgtcatACTCGGGAAGCAACATACAGCAGATGAAGGGTTTTAAAAAGCAGGTACCGAAAACCATTCATTTGTGTAGTATGTGATCCCAATACACTGACATCTGTGTGATGTGACAAATGACTAAACAGCCTTGACTGAACACAAAGAATGACGCAAAAGCTGACAAAAAGTAATGGTAGCTATGAGCCTAAATCAATCAACACCTTGTAACACTGTATGTGGATAAAACAAGTGGAAAGTGtttgaaatacaaagcaatacaGCCAGACAACCCTAGCAGGTAGGTTCATAAAGCATAACTGTGGCAGTTTTCATTCTTTGTAACTATGCCCCCTTTTGTGGTGTAAAACAGTAGGCATTTGTACTGTACTTGCTTAAGATTGCCATCTGAGTTACaatccaatttaaataaaatacgaAGACTactacaaaattataaaaataaatgcaaaaatactatcaaagtgtaagaaaaaaagaaatcgCACCTTCGTGAAACATGTGCCATTGTAAGTGACAGGGAAGAACTGCGAATAACTCTGCATGAACTATATAACCGACAGAGCAATGGATGTCAGCGTAGGTTTTAGTAGTACTTGAACTTGCATCTGTCATGGGAGTCAGCCAGAGCATAACCACCGGCCCTGAAGATGTGTGAACAGAGACGTTTTAGATCTCTCCCAATCTGTCAATGCTTCAATCTAATCCTACAGATCTGCTCCCTGAAGGCAACAAACCCAGGCAGAACGTGTCTGCTTGCTTCTCCATACATTTTCTCTGCAAATGCTTAATATTTGGTTTTGCTGCGTCTTCCATCCTGCCAAGTCCACGTCAACCTAATGTCTTTAGTCTTCAATTGACATACAGTGTATTTAGACATGGTAACTGGTACAGTACTGGCTAATTTACAGTATTGAGCATTTAAGCCtaagcattttaatacaatttcctTTTATATGTAGATACACAATTTTAGATTATTCTAGATTctacattattttgattaattttgctGGTTAGGATACATCTGAATAAGGAATGTAAAGTAGGTGGTTACTCAGTTGACTGTGTCCGCAATTCAGATCACCTTGATTTTATCGGCTACCAGGtcattcttttaaaaagtatatttatgcCTCTAGCCTAACAACAGACCTGTTCTTGACGTGCACGATTGACTGATTTATGGGAagttataatgtttaaaactaaattctTTGACAGAAATTATATTAGCTTTCTTCTAATATGTAGGAGACTGTTGCTTTTCATGGCAAACATACTGTATAAGTCACTATACACAACATGCGCTATTACTTAGTAGGAAATGTATGGTGCAGTAGAAAATCGGTATCCGATCATGCAAAGCAGCAGGAAACTAAGATGGCATTCCTAATTGTGCGATGGTCCTCCATCTCCCCACCTCACTTGTAGTGTTTAAATTTAcggcagtttaaaaaaacaacaacaacaaacaactgtCATCTGGTCGATGGATCTCACACCTCAGCACCAAGTGATTCCATCAAAAAGAATACAACACTTTACACAGAACACAAGTTGTGGATTATTACCCCATTGATAACGAAtgaaaaaaacgaacaaaccaacataatacaataataatgataaaaaaaaaaaaaaaaagtactagGTAATTCTTTTAGCAACAGTACGAGATTCAAGCGCCGGCCTGCACTTCTTGAGGAAAGGAAGGTATGATTGgagttttttcattttactttttcttcttcctttgcAAGCCTTCTTATATGTCCTTTGTAGTTGCTTTCTTGGTCTTCTCCACGGTTTCCTGGTGTTTGTTGAGCTCTGACACATGCCTGGTCCATTCCTCCTCGGTCATCTCGTCCTGCTCATCGTCCACCACGGGGGCGGCCTGCTTATCTTTACCACTGCACGTCATGGCAGTGCACACCCAGTTTCCACAGGCGCACACACAGCTGTTACACTCCACCTGTGTCTCCGCGCCATCGTCATAGGTCTCGTCCTCAAGGGCACACTCTGTGGAAGCAGATGGGTCAGTCATGCTGGGAGATACAGAACACCGACATCACTAACTGCTCCCCTGAAGAGTGACTCACACCTTCATAGCTTATTGTCCTATTGATTCCTCTCTAAGAAGGAATGAGTCATGATAAAAACACCTTTTGGACGAAAAAGACATATCTGACTTTGCTGCTCTGTAGAGGTATGATTATCTCTCACCAGGGAACGTGTTCTAACAACAGTCAACGTTAAGCATAGACTAGAACTTAAAAGCTGCATGCTCAGCCAAAGTTCTTTGTATTGACTTCTTATATTTGTCAGTCTAACCACAGGGGTCCAAACATTGGCATAGTCTCCTGATATGTACAGTCCTTGCAGGGAATGCTTGATTTTGACCCAGTTTGAGAAAGAAGACCATCTTAGTCAAGGACCAGTTGCTTAAAGCACATTAAGATGctgttatttgcatttaaatgggtTGCACAAAGTACTCTAAAAGTCAATATGCTAGTTAAGAGAAAAGATGGTGAATTTGATACTTTGCTATTTTTTACATAACTGGACTGTCTGTTTTTTGGAGTCTGTCCGTAACAATAATATTATCCAAAGGAGAGActgtattaagaaaaaaagacaaaggacAAACAGAAAGTCTTTTAAACCTACTCAACATTTGTAGGCAAAAAAAtgacaaagtaaaaacatttaatttcaacagCTGTGCTTCAGATTCCAAGAAGTAATAAACCGTATATCCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90391 False 1267 lncRNA 0.36 2 28674381 28766089
TU90392 True 3509 lncRNA 0.38 3 28761956 28766089

Neighbor

gene id symbol gene type direction distance location
AMCG00014718 NA coding downstream 179355 28494507 ~ 28495026 (-)
AMCG00014719 NA coding downstream 179895 28494106 ~ 28494486 (-)
AMCG00014717 NA coding downstream 183818 28487629 ~ 28490563 (-)
AMCG00014716 usp9x,LOC108272755,LOC107595873 coding downstream 294328 28341151 ~ 28380053 (-)
AMCG00014715 ddx3x,LOC108412429,LOC102776245,LOC107564811 coding downstream 358983 28289355 ~ 28315398 (-)
AMCG00014730 NA coding upstream 164276 28930365 ~ 28951352 (-)
AMCG00014731 NA coding upstream 229847 28995936 ~ 29013055 (-)
AMCG00014732 NA coding upstream 257689 29023778 ~ 29031908 (-)
AMCG00014735 NA coding upstream 585659 29351748 ~ 29383448 (-)
AMCG00014742 sik1,LOC105911651 coding upstream 687953 29454042 ~ 29463876 (-)
G72307 NA non-coding downstream 16082 28658077 ~ 28658299 (-)
G72306 NA non-coding downstream 18616 28655566 ~ 28655765 (-)
G72305 LOC100136012 non-coding downstream 27570 28646495 ~ 28646811 (-)
G72280 NA non-coding downstream 95647 28578409 ~ 28578734 (-)
G72146 NA non-coding downstream 813006 27856739 ~ 27861375 (-)
G72318 NA non-coding upstream 1511 28767600 ~ 28768329 (-)
G72323 lrrc58,LOC102790154 non-coding upstream 9192 28775281 ~ 28775737 (-)
G72324 NA non-coding upstream 10138 28776227 ~ 28779293 (-)
G72334 NA non-coding upstream 54731 28820820 ~ 28821076 (-)
G72370 NA non-coding upstream 159541 28925630 ~ 28994350 (-)
G72236 rpl8,LOC107595836,LOC107748161 other downstream 341899 28329739 ~ 28332482 (-)
AMCG00014692 LOC107756725 other downstream 1304854 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 1369784 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 6429466 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 9449151 19217722 ~ 19225230 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 623201 29389290 ~ 29398305 (-)
AMCG00014775 NA other upstream 2075434 30841523 ~ 30846800 (-)
G73047 NA other upstream 3497078 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 3689217 32455306 ~ 32555945 (-)
G73127 NA other upstream 3831373 32597462 ~ 32619149 (-)

Expression


Co-expression Network