G72341


Basic Information

Item Value
gene id G72341
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28918976 ~ 28921290 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU90416
TAGACTGCCTTCACTAGAACAGGATGTTGTGGTGAGCATTCCTGCCCCTACTGTCTTGAAGAAGAGTTTAAAAACTTCAGAGGCTGGAAACAGTTGCCACGTTACCAAGctgtagaaaaaagaaaagtgaaaacttGTGCAGTATTTAAAGATTCTTCCTGCTGTATTGTAACTAAGTTTATCTGATACTTGTGGTATGGAAAGCCTCTGATCACGAACATAGCGCAGCGCTTCTTTGTTCCTGTCGGAAAAGGCTGATCAGATAAAACCTAAGGTGGGGTGAGAAACTTTAAACAGGAAGTCGTTCTGCTCATCGAGGTGACACGACGTGGAGCAGATAAAGGCAGACCTGTGTTACTCTTTTTTTCCTATCCTTACACAATTATGCTTTTAACTTAAGTAAACATTCTGATGTTTCATTTTAAGGCTTGAATTGTGCCACAGTTCTACAGTTCCTCCAATGTTTGGGGAAATGCACGGGGTGAGGGGGTGGACAAGTGTGAAGGCAACGTGATCTAAAAAGAGGGTACCATGTTGAGCTGTTGGCTACGTGTTTCGTTTGACCACTACTGAAGgattttttgcttaattttattttgatttttctaCTTTTATGACCTCCCCGCCACtgctaccaccaccaccacccccgcTGTGACCTCCACATCCCAGCCAAGCCAGTTACAGCATGTATCCCACTGCTCTTCAGTACAATCCTTGAACACGTCTTACTTCAAagagttataaataaaatgttgtatgtatatatagttgcTCCTCACCAAATTCTTGCTTGtccttatttttgttgtgtacGGTATGTAAATATGCGGACCCAAGAACTGTTATGATCAAAAAAcgaaacaagaaaagaaaaaaagaaagaaaaaaaagattcaggGCAAATAATTCTGTTTATTCAAAATGTAGATGAGCTTTTTCAAGCCATATAGTTCAATCTTACTGTACAGTAGGTGCCAGCTATATTATTGTAACAATAACTAGTAATGTATAGTGTATCTATAGTTTGGAGTGCCTTTGCttccattattttgttattttttttcctttcctctgttattttcccctttttaacCCCTTGAGTGCTGTTAAGTGCCAGTCCATTTATCCTCTAAAGTCCAACTTGCAATTTCAGTATGCGTAGTTACTTTAACCAGCAgtattttagaaaagaaaaaatagccAGTTTTAAAGTAAGGACTTTGCAATGTATCTCCATTGTGTTGTATTCTAGACTGTTTAATCTTTTTGCTGAATGGAAACCTATAGTTTTCGTCCAATGTTCCTgttggtgtatttttttaatattgattttaatccattttaagtgattttattcattcaattgCAGATTCGTGATACTTTTAAGACGTCAATGTTTTAGCTGGTATCCTTCTCAGTAGCGTTGCCTCaggttattttgtgtttattttttttgtttattttttaaacatcaaaatagTATCAAAGCACATGgtatacaatacattttgcctatggtattggttttcttttctgaagGGTTAAGAAGCAATATTCATCTTTTAGCAGTTGACTTAAGGCAGGTCTGTCTACAGTGTTACCTAAGTGTCTGGTTGTTCAACACCGGAGTGTTAAAATGCCGATGTCTGtcacttctgttttctgtcccATTACCAaagtgaattaataataatgtcactGTAACAGGAGGAGGCAATAAAGATTACTCTAGGATTTACTTTTTGTGAATGCTTTCTGATATGCATTCAGCAGCACTCAATGGGCTAATTACCATGTAGCTCCCCtcttgtgaaatatatatatatatatatatatatatatatatatatatatataagcttgCTTGTAATATTTGCACTCATAGATGTGTTGCTATTGGATCACCTGGCCTGTAAAACAAGTGTGACCACTTCTTGTGtctgaagtaaaataattaaaaggaaaaaagaaaaaaaaaaatggaaaggacTGTGGGTTATATACAGACTATCGCATACacttgtggggaaaaaaaaaaaaagctgtcttgatttaaaaaataaacaataaaaaacaaaaaaaaagacctgtATAACATTACTACTTGAATGCCTCTGTTTGTgactgaacatttttattttattttaagtataaacttttttttttttttctgtgaaagtATGCTAAATGTTTCCCACCTCCCTGTAAATAAGTCCGTTTTGTTCTTCAGTGTGACTTGGTTCAAAAATAGTTAACTGGTACTGtaatttgcattaaataaagAGTAGGTTAGCCTGGAAATGAAGAAAGTG

Function

GO:

id name namespace
GO:0046530 photoreceptor cell differentiation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90416 True 2315 lncRNA 0.35 1 28918976 28921290

Neighbor

gene id symbol gene type direction distance location
AMCG00014728 gsk3b,LOC107559500,LOC107721573,LOC107551994,LOC107715908 coding upstream 2342 28905901 ~ 28916634 (+)
AMCG00014727 gsk3b,LOC107703010 coding upstream 28008 28881917 ~ 28890968 (+)
AMCG00014725 lrrc58,LOC106574305 coding upstream 139686 28767435 ~ 28779290 (+)
AMCG00014726 LOC103028151 coding upstream 152886 28695811 ~ 28766090 (+)
AMCG00014723 NA coding upstream 309789 28591078 ~ 28609187 (+)
AMCG00014734 NA coding downstream 174839 29096129 ~ 29110638 (+)
AMCG00014733 NA coding downstream 199661 29120951 ~ 29129042 (+)
AMCG00014737 NA coding downstream 386650 29307940 ~ 29321592 (+)
AMCG00014741 LOC106586690,LOC106582147,LOC106575755 coding downstream 462198 29383488 ~ 29398221 (+)
AMCG00014740 LOC107557921 coding downstream 479342 29400632 ~ 29421379 (+)
G72329 NA non-coding upstream 87001 28831756 ~ 28831975 (+)
G72273 NA non-coding upstream 340243 28526788 ~ 28578733 (+)
G72208 NA non-coding upstream 577259 28337291 ~ 28341717 (+)
G72173 NA non-coding upstream 618163 28297669 ~ 28300813 (+)
G72169 NA non-coding upstream 621492 28240566 ~ 28297484 (+)
G72353 NA non-coding downstream 59832 28981122 ~ 28985576 (+)
G72354 NA non-coding downstream 68317 28989607 ~ 28991299 (+)
G72409 NA non-coding downstream 215839 29137129 ~ 29137353 (+)
G72415 NA non-coding downstream 235735 29157025 ~ 29160425 (+)
G72426 NA non-coding downstream 270681 29191971 ~ 29192278 (+)
AMCG00014729 NA other upstream 81066 28797049 ~ 28837910 (+)
G72175 LOC102776245 other upstream 614903 28302373 ~ 28304073 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other upstream 1039176 27868703 ~ 27879800 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other upstream 1077105 27835503 ~ 27841871 (+)
AMCG00014687 NA other upstream 2007739 26904877 ~ 26911237 (+)
AMCG00014739 NA other downstream 326585 29247875 ~ 29256354 (+)
AMCG00014738 NA other downstream 347039 29268329 ~ 29279149 (+)
AMCG00014757 LOC105927538,LOC107688735,LOC105016589,LOC104946938,LOC107716767,LOC107676512,LOC107099897,LOC103140352 other downstream 922177 29843467 ~ 29846586 (+)
G72605 NA other downstream 930160 29851450 ~ 29851821 (+)
AMCG00014777 NA other downstream 1843061 30764351 ~ 30812287 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G94790 NA non-coding NC_048565.1 CM023219.2 84121792 ~ 84122010 (-)
rainbow trout (Oncorhynchus mykiss) G197732 NA non-coding NC_048566.1 CM023220.2 86244259 ~ 86244682 (-)
striped catfish (Pangasianodon hypophthalmus) G88017 NA non-coding NC_047599.1 CM018545.1 24727018 ~ 24729084 (+)