G74593


Basic Information

Item Value
gene id G74593
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 39934893 ~ 40012081 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU93148
CCCGCGTGCTGCGTCCCGCGCCGCCCCTTTAAACAGCCCCCTCGCTCTCGCGCAGCCCACAGTCCGTGCAGGAGCCCAGAGAGTCGAGCGCATATctatacacagagacacacagggtcGCTGCCGTGACACACTGTAttatacacactgtatatagagacacacagggtCGCTGCCGTGACACACTTAAttatacacactgtatacagagacacacacggACCGCTGCGATGGGGCTGGACGGCTGTGGCTACTGCTGCAAgatcatcctcatcatcatcaacatcatatTTGGGATCGCTGGGTTCCTGATGCTGGCGCTTGGACTGTGGTTGAGGTTCAGCTCGCAGACACGGGGATTCTTCGAGATCGACCTGAACACCCAGCAGTTTGTCATCGTGGTGACGTTACACAAAACCCcttcaactttaaacattgtgatattaatttcctgGCCTTGTATGCGGATGTGGAACAGATCTCTATTAAACCGCTACAACCGGACTTCGCAAATGATAACTGTGTCCGGGAGTACTTTAACCTGGTGGAAACAGCCAGAAAGGGCCTCAAAGACAAGCCTCTGGTAGTGGACCGTAAGGAGTTTGCCAGAGGTTACACACTGTTTGCATTCAACCTGAGCCCGGATCAAGAGTGCACCGGGCACTATTCACTCATAAAAACAGGGAACCTGTGAGCAGAAATTCGTTTTGCCCAGCCATTACCAACCACCGTGAACATGAtagtgtatgctgtttttgacaACATTGTTGACATTAACATGAGACGCCAAGTCCTTTACGACTACAGTTGAAAAACAATTGCCTTGTGGCTTTCACTAAACTGGTCATGAATACGCAACAGCTTGGGGCCATCATGACTAAGGACAGTTACACAAGAGACTATTTCCATGTGATAAGCTCCCCAAACAATCAGGAGTCCACAGGCCGGCCTGTTTCGACATCAACACACACCGACATGACTTACCTGAAGAGCACTGGCTCCCTATCTATCTAGGAGGAGATGGGAATGCTGAATTCTTTGATTCTTACGGATTCCCCCCCAATGCTCCTTTTTTCCCTAAATCAGTGTTAACAGTGTATAACTCCAAACAAGGTGCTTTATCCACAACATGTGGAAAccactgtgtgtatttttttacaacAGCGTTGTAAAGGTTTAGCTTATAATCAGATATTGgatttgtattctgaagatttaattagtaatgaCAACATGGTAATGCAGTTTGTGAAAAGTTGTAACAGGAGAACGAGACCTATTTGTTTAAGCTTCATGTAAATGAGAATTGTCAGATGTGTAACCGAATGCATGATTTTAGGATCTGTCATAATTGCTAAATCAGTCAtaaacagcagaaataaacaatgttagAACAGTGTATGAATAACACTATAGAATGATAGAataatgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaagcttaatgaCATTTGAAATTCTCATATATGTAATGCCTG
>TU93149
CCCGCGTGCTGCGTCCCGCGCCGCCCCTTTAAACAGCCCCCTCGCTCTCGCGCAGCCCACAGTCCGTGCAGGAGCCCAGAGAGTCGAGCGCATATctatacacagagacacacagggtcGCTGCCGTGACACACTTAAttatacacactgtatacagagacacacacggACCGCTGCGATGGGGCTGGACGGCTGTGGCTACTGCTGCAAgatcatcctcatcatcatcaacatcatatTTGGGATCGCTGGGTTCCTGATGCTGGCGCTTGGACTGTGGTTGAGGTTCAGCTCGCAGACACGGGGATTCTTCGAGATCGACCTGAACACCCAGCAGTTTGTCATCGGT
>TU93150
CCCGCGTGCTGCGTCCCGCGCCGCCCCTTTAAACAGCCCCCTCGCTCTCGCGCAGCCCACAGTCCGTGCAGGAGCCCAGAGAGTCGAGCGCATATctatacacagagacacacagggtcGCTGCCGTGACACACTGTAttatacacactgtatatagagacacacagggtCGCTGCGATGGGGCTGGACGGCTGTGGCTACTGCTGCAAgatcatcctcatcatcatcaacatcatatTTGGGATCGCTGGGTTCCTGATGCTGGCGCTTGGACTGTGGTTGAGGTTCAGCTCGCAGACACGGGGATTCTTCGAGATCGACCTGAACACCCAGCAGTTTGTCATCGGT
>TU93152
CCCGCGTGCTGCGTCCCGCGCCGCCCCTTTAAACAGCCCCCTCGCTCTCGCGCAGCCCACAGTCCGTGCAGGAGCCCAGAGAGTCGAGCGCATATctatacacagagacacacagggtcGCTGCCGTGACACACTGTAttatacacactgtatatagagacacacagggtCGCTGCCGTGACACACTTAAttatacacactgtatacagagacacacacggACCGCTGCGATGGGGCTGGACGGCTGTGGCTACTGCTGCAAgatcatcctcatcatcatcaacatcatatTTGGGATCGCTGGGTTCCTGATGCTGGCGCTTGGACTGTGGTTGAGGTTCAGCTCGCAGACACGGGGATTCTTCGAGATCGACCTGAACACCCAGCAGTTTGTCATCGGGGGGACGTTTGTCGCCGAATCCGCCTCTAAAGCCGCGGCGCTGCTGCTCCGGCCCCGCAGAGGAGGGGGTGAGGCGGGGAGAGACCGCGGGAAGGACGGAGAAAACACGCCCCTCGCGTCCTCCTGGTAGCCGGTCCTCTCCGCCCGCGGCGGCTCTCCTGCCCCTCTCCCCGCTCCCTCTGCCGGGAGGGAGTTGTCCGGCAGCGGGAGGCCGCGGGCTGTCCCGGGGTCCAGGCGGGAGAGCAGGCACAGCAGACACGGCCACAGCCACACTCGAGAGCGGGGCTCCACCATCTCGGCCGCAGCAACCCGCCCCGACACTGTACTAAACCAATGGTAACCAACAATAGTAGCTctcgcttttttttttgtggtttcctccttcttcttctcccgCCTACGCTAAATAACCAAGAGGTACTACTGTTGCTTATAGAAGACCAGTGTCCCCAGCCGTGTATTTATAGCTCCGGTGTGTCTTTCTTATTTAATGagttaattggataattggcCCGCGTCGCAGAACAGCGCTGTCCTCGGCGCGACAGACGCGTCACATGCCCGGGACAAGCAGGGCGCTAATGTAGCCACggtggtgattattattaagtagTAGTGTTTGTCTGAAggttagtattagtattagtactGTAGATTTATTAGTAgtactgtattattatcattattatgagtagtgtaatattagtaatattattattattattagtagtagtagtagtagtagtagtagtagtagtagtagtgtagtattggtattagtagtagtattagtagtagtatgcGCCcattcccttggcccttgactgtgacttaacatcttgtctgcactgatcagcttttacaatccaggatgtaagaccccaCACATTGTTtgctgtatatctcatatacacttgtgtaaattggaatttgtaaaatgtattacgccttgaattgcactgtattattgcactttgtattgctcttat
>TU93153
CCCGCGTGCTGCGTCCCGCGCCGCCCCTTTAAACAGCCCCCTCGCTCTCGCGCAGCCCACAGTCCGTGCAGGAGCCCAGAGAGTCGAGCGCATATctatacacagagacacacagggtcGCTGCGATGGGGCTGGACGGCTGTGGCTACTGCTGCAAgatcatcctcatcatcatcaacatcatatTTGGGATCGCTGGGTTCCTGATGCTGGCGCTTGGACTGTGGTTGAGGTTCAGCTCGCAGACACGGGGATTCTTCGAGATCGACCTGAACACCCAGCAGTTTGTCATCGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU93148 True 1505 TUCP 0.45 3 39934893 40012081
TU93149 False 349 lncRNA 0.57 3 40011069 40012081
TU93150 False 348 lncRNA 0.57 3 40011069 40012081
TU93152 False 1389 TUCP 0.51 3 39984694 40012081
TU93153 False 296 lncRNA 0.59 3 40011069 40012081

Neighbor

gene id symbol gene type direction distance location
AMCG00014924 NA coding downstream 112804 39820563 ~ 39822089 (-)
AMCG00014920 si:ch211-241c24.3,si:ch211-241c24.4,LOC107745955,LOC107553807 coding downstream 170253 39762570 ~ 39764640 (-)
AMCG00014916 NA coding downstream 277331 39648804 ~ 39657562 (-)
AMCG00014917 NA coding downstream 293637 39640411 ~ 39641256 (-)
AMCG00014915 NA coding downstream 335397 39592614 ~ 39599496 (-)
AMCG00014930 NA coding upstream 17691 40029772 ~ 40039325 (-)
AMCG00014935 NA coding upstream 73695 40085776 ~ 40107665 (-)
AMCG00014933 NA coding upstream 141338 40153419 ~ 40160349 (-)
AMCG00014934 NA coding upstream 150305 40162386 ~ 40164580 (-)
AMCG00014945 LOC107382204 coding upstream 296806 40308887 ~ 40315938 (-)
G74515 NA non-coding downstream 180955 39753695 ~ 39753938 (-)
G74512 NA non-coding downstream 190534 39744128 ~ 39744359 (-)
G74510 NA non-coding downstream 198492 39736044 ~ 39736401 (-)
G74501 NA non-coding downstream 232299 39699563 ~ 39702594 (-)
G74469 NA non-coding downstream 310100 39623354 ~ 39624793 (-)
G74611 NA non-coding upstream 30926 40043007 ~ 40043290 (-)
G74625 NA non-coding upstream 89812 40101893 ~ 40139101 (-)
G74633 NA non-coding upstream 116840 40128921 ~ 40129366 (-)
G74725 NA non-coding upstream 284780 40296861 ~ 40299179 (-)
G74736 NA non-coding upstream 325983 40338064 ~ 40360225 (-)
G74477 NA other downstream 295936 39637899 ~ 39638957 (-)
AMCG00014914 ankrd54,LOC107563363,LOC107728844,LOC107559232,LOC107670919,LOC107719341 other downstream 343235 39590496 ~ 39591658 (-)
AMCG00014906 NA other downstream 555740 39378175 ~ 39379153 (-)
G74375 myh9,LOC100380669 other downstream 674533 39258062 ~ 39260360 (-)
G74247 LOC100136012,LOC107575789 other downstream 1014540 38898095 ~ 38920353 (-)
AMCG00014938 NA other upstream 222977 40235058 ~ 40268485 (-)
AMCG00014946 NA other upstream 269113 40281194 ~ 40294526 (-)
G74726 NA other upstream 291150 40303231 ~ 40304085 (-)
AMCG00014951 poldip3 other upstream 389702 40401783 ~ 40410777 (-)
AMCG00014949 ndua6,ndufa6 other upstream 425178 40437259 ~ 40534709 (-)

Expression


Co-expression Network