AMCG00018625


Basic Information

Item Value
gene id AMCG00018625
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15785893 ~ 15790897 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018625
GGCGCTCTTTCCTCAGCAGCGCCAGCTCTGCGGTCACATGACTGCAGGAAGTGAGCGTATGACGTCACCAAACTGTTCCGGGGGAAGGTCAGCTGACACAACAGCCAGCGCTGTGGCGGAAGTGCAACAGAGGGAGGGGAGCCTTTCGTGGTCTGTAAGGATGTCCGCCTACCCGAAGAGCCATAACCCTTTTGCCGATGAAGATGAGGAGGAAGGGAGTTCtgggtggggagggggtttGGACGAGTCCAAGGAGAGCCGGGTGAGCGAGGCCGAGCGGCGGCAGATGCAGCTGGAACAGGAGGTGAGGCGCACGGCCCAGTCCGCCGTGGACAGCAGCTACCGCTCCCTGAGCCTCATCTACGAGTCGGAGAAGATTGGCACCGAGACCGCAGAGGAACTGGTGAGGCAAGGTGAGGCACTGAAGAGGACTGAGAGGATGGTCGACAATATGGACCAAGACCTAAAGACCAGCCAGAGACACATCAACAGCATCAAGAGTGTGTTTGGGGGCTTCATGAATTACTTCAAAGCCAAACCGGAGACCAAGCCCCCACCAGACCAGCCAGCACAGTACAAACCCAGCACCAAATTGGAAAACGCATTAGAAGAAAGTAAGATGCAAGAACAGAACTATCAAGCCAGCCACCCAAACCTCAGAAAACTGGAAACGTCAGGATTTGGAGCTTCTGGATCAGAGTTCCCCTCCTCCCACAGTAACATGACATATTCCAAGAACAAGCACCTACAAACAGCTCATGAGCAGCTGGACAACAACCTAGATGACATGTCTCTCGGCTTGGCTCGACTGAAGAACctggggctggggctgcagTCTGAAATAGACGAACAGGACGTCTCTCTGGAAAACCTGCTGGGCAAAGTGGACAAGATGGACCACAGGATCAATGAAACCAACCAGCAGCTcaaaaaactttaataaattTCAGACAACAAGAGCTCTGCTGCATTTTATACTTGTACACACTATTGGATtctattgtcattttttttaaagtctttatTCCCCACCCCCAagcaaaaatattgtattcttaGTTTAGAACTGAAAAGTACTCCATCAGTTATGATTTGATTAATGcagatattcaaaatatttcaaattgaatggTCCAGAACATTTGGAAAACTGAATACAGTACAggtttatttcataattttaaagcCGCAAAATTATTCTTCTTTAGCTAAAACATACTGCCACAAGTAGTGGTTTTCAGTTCTGGTCAAGAAACTCATTGCACGTTGTAGAAAACAATGACTTAATACCTCCTTTATTtgttctctctcacactctaTATTCACATGTTACGGTCTATTATTTAAAGTTACATTGTAGCAGGAAGGTTATTGAACTTAATGCCAAGTGAATCTCTTACCACTAATATGACAATACTACACTAGATCACAGTACAATCCTCCTGGGACAAGCACTATGATTGAGGACATTCATTAAGCATCAATGAAGCCAAATTTTACAGTATCTGGTGCACAGAAGATGGTGAGGATGAACTAGCAGTAAGCCAAATAGTGAGCATGGTAATTGCATAATTAGAAATATATGTGATGTTTTGCCTGAAGTGCATTAATGGTTTGATGGTGAATCTAACATGTACAAAACAAGCTGCCTTGGGAtgaatttcacatttgtatAGATATTCTTAAAACTGATTTCGGTCTCTTGCCTTTCAGCGTTCTCTGTTTTTGAATATTAGGTAGAAGccttagtattgttattatttgttttgctgtgtaagaaaaatatttgtattaaaaccaaaataatgtaaaatggg

Function

GO:

id name namespace
GO:0048730 epidermis morphogenesis biological_process

KEGG:

id description
K08509 SNAP29; synaptosomal-associated protein 29

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018625 True 1817 mRNA 0.44 6 15785893 15790897

Neighbor

gene id symbol gene type direction distance location
AMCG00018623 NA coding upstream 8590 15772309 ~ 15777303 (+)
AMCG00018624 NA coding upstream 94152 15682455 ~ 15691741 (+)
AMCG00018620 NA coding upstream 116224 15668815 ~ 15669669 (+)
AMCG00018618 NA coding upstream 137718 15637974 ~ 15648175 (+)
AMCG00018619 NA coding upstream 200806 15583593 ~ 15585087 (+)
AMCG00018630 tbx1,LOC102781442 coding downstream 221390 16012287 ~ 16025098 (+)
AMCG00018635 NA coding downstream 465300 16256197 ~ 16278801 (+)
AMCG00018637 NA coding downstream 489936 16280833 ~ 16286663 (+)
AMCG00018638 ranbp1,LOC106580467,LOC107684983 coding downstream 505141 16296038 ~ 16298711 (+)
AMCG00018636 pgam5,LOC107089933 coding downstream 582999 16373896 ~ 16378701 (+)
G117573 NA non-coding upstream 87028 15695426 ~ 15698865 (+)
G117574 NA non-coding upstream 90640 15693213 ~ 15695253 (+)
G117557 NA non-coding upstream 158174 15627339 ~ 15627719 (+)
G117521 NA non-coding upstream 256552 15492246 ~ 15529341 (+)
G117380 NA non-coding upstream 885975 14855079 ~ 14899918 (+)
G117660 NA non-coding downstream 292456 16083353 ~ 16121445 (+)
G117768 NA non-coding downstream 957972 16748869 ~ 16749971 (+)
G117783 NA non-coding downstream 1218001 17008898 ~ 17009246 (+)
G117801 NA non-coding downstream 1362885 17153782 ~ 17155824 (+)
G117804 NA non-coding downstream 1369865 17160762 ~ 17161040 (+)
AMCG00018602 LOC102789415 other upstream 804188 14954564 ~ 14981705 (+)
G117383 NA other upstream 997760 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 1008783 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 1373614 14408958 ~ 14412279 (+)
G117178 NA other upstream 1438152 14345090 ~ 14347741 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 1277315 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 2190243 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 2928309 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 3036700 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 3103438 18894335 ~ 18908956 (+)

Expression


Co-expression Network