AMCG00018630 (tbx1,LOC102781442)


Basic Information

Item Value
gene id AMCG00018630
gene name tbx1,LOC102781442
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16012287 ~ 16025098 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018630
gcaaaatgtatagataaTGTGAAATAAGTGGATAAAAACAGACCAGACGCGGCGTGCAGACTGCTCCGTTTAAACAGGCACTGAGTTAATATACACGGCGAGTCCGAGCACCCTCGTACAATAGAGTGTATTTCTTCATGTACGATAGGTGTTTGTTGATCTTGTGCAGGGGCACTGACCATCCCTATTGTCCAAGAAGGTCTTTGTGGGCGATGCCCTTTAACTGAAAGTAAATGGGTGCCGGGATACCCATTAAAAGGGGCGCActtctctgtctgtcagtcagctTCGTCCCAAGGCGAGGAAAGGCATATTACCTGCAGTTCCTTATCTAAATAGAAATAAGAACCGGTTTTATCGCGAAGGGGAGGCCCTATGCAAAGATAAGAGAGAAGTCTGGATTGCAGTGGCGCATAGAGCAGTAGCGCAGCGCACAGACCGCTTGGAATAACTTGGACAGACAATCTCAGACAAGCAAGGCAGCGCATTTGTATATGGAAGTCGAGAAAGCAGACTCGTTTTGCtctatattttgtatcattacATTTATAGACAGATACAGATAAAAAGGCGATTTTAAGGAACTGAGCATTTGAcctacttttgtattttcttctttggATGTAATTTCAAAGTTTCGTTGACAAAGAAACAACCCCGTACAGGCTGTATGTGgtatttaaaaacttaaaacctACAGAGGACATACAACCACGGAGATGAATGGAAAGAACTGTTAGGCTTACAAAAGGGAATATTTTTGATCGGTTTGTGTCGTGCATAATTATTTTGGGGGcttatttgtgatttaaaacaaaaaataaactttttccccccctcttcttttttttcttttactaatAAGAGCGTATCGAAAAAGAAGGAACAGTAAGCCCGGTTTTGGGAATGATTTCAGCCATTTCCAGTCCGTGGCTGACTCAGCTGTCCCATTTTTGCGATGTTGCAGCCTTCACCACCAGCAGCCTGAGCAGCCTGAATGCGCCCGGGAGTTACCACCTCTCGCCGTCCCCTGGGGACCCGTACAGTCAGCATGAGCCCCATTACGAGCCCTGCTCCGCCGCCCAGCACAGCTACAGCTACCCGGGCTCCAACCCGGGCCAGGCCCAGCAGAGCGACACCGGGACCTCCAGCTGCTCCTCGTCGTCCTCAAACTCCACTCCCAACAGCAAGCCCCCCGTAAAGAAGAACCCCAAAGTGGCCAACATTAACGTGCAATTGGAGATGAAGGCACTGTGGGATGAATTTAACCAACTTGGGACTGAGATGATCGTAACCAAGGCTGGCAGgAGGATGTTTCCTACATTTCAAGTCAAAATTTTTGGGATGGACCCTATGGCCGACTATATGCTTTTAATGGATTTCTTACCAGTAGATGATAAACGATACCGGTATGCCTTCCACAGCTCATCGTGGCTGGTGGCCGGCAAGGCGGACCCCGCCACTCCCGGGAGGGTTCACTACCACCCGGACTCTCCAGCCAAGGGCGCCCAGTGGATGAAGCAAATCGTCTCCTTTGACAAACTCAAACTGACAAATAATCTACTGGATGACAACGGACATATCATCCTGAACTCCATGCACAGATATCAGCCCCGGTTTCATGTGGTCTATGTGGATCCCAGGAAGGACAGTGAGAAATACGCTGAAGAAAACTACAAGACCTTTGTCTTCGAGGAGACGCGCTTTACGGCGGTCACTGCCTATCAGAACCACAGGaTCACGCAGTTAAAAATCGCCAGTAATCCCTTCGCCAAAGGCTTCAGGGACTGCGATCCGGAAGACTGGCCGAGAAATCACCGGCCAGGATCCCTGCCAATCATGAGTGCCTTCGCCAGGACCAGGAACCCCATGTCATCCCCCCCACAGCAGAACGGCACCGAGAAAGAAGTAGACAGCCGGCGAGAGTATGACCGCGACCCCAGCAGCACCCCCATCCACGGCGACCCCGCCCACCAGCTGATGTCACGCGTCCTGAGCCCGGCACTCCCTGTCCCAGGCGGGCTGCACCCTGTCCCCCTGACCACGGGACGCCCCAGCCCCCCCCACGAACTGCGGCTTGATGGGCACCCCCAAGCCCCCGACAccctccaccaccacccctACAAGTACCCCAGCACCTACGAACACTACCTGGGAGCCAAGACCAGGCCGTCTCCCTACCCACTGCCCAGTATCCGGGGGCACGGCTACCACCACCATATGAACCCCGCTGCTGCCAACATGTACTCTGCTGCCGGAGCCCCTGCAAATTACGACTACGGCCCTAGATAACAGCTTTGTTTtaagtaatgtatatatatataaaactatatatgtaCACAGAAATGGTTGAAGTGCACGGCAACGTGAGACAAGGAAATCAAAACACTATTTTCGCGTGCATTGCTAAATTAAAGTGTTATAACTTCTGGGAATAACACTCCTGTGAATGGATCTGCTTGGAAGCCTCCGATATTTATTAAGGAAGGGTGGTTTAACAAGAAGCGGGGCGTCCTTCACGGCCAGTACAGGAGGATGCAGGTGGATCACACAAGCTCCCCCTGAAGACTGCCCAGCAGCTCCTTTGAACTGTGATACCAAGAGCACTCTTGAGCAAGACTTCTGCACCCATGGGTGTGGTGTGAGCTGTGAACGAGCTTACAGAGAACACAAGAAGACTCTCTGATGAGAAAAAGGATGATAGATAACCACAGACTGgaatttcattttgtgttggatgcacttttttttgctttaaaaacaagccATATGTTATACTTTTGAACCCATCAAGCTTTTAGATTGACGAGAGATCTGTGAGCTCAGCTCTTTGAAGATAACTTGGTTGTCTTCGCTATTTGTTTCGGAGAGCAAAACCGACAAGATTGTTTTGACACTTTGGAACGTCATGAGTAATACAGAGGAGCACTCGTCACATGGCACTGACCTGCAAaagattacttaaaataaaaaaataaaaacaatagataCAAAGATTTCTGTGctgtaactgtaaaaaaataattaaatattttactgtaaaccCTTACAAATCTTTATTTATCTTCTCTTTAAAGCATGCCATTTGAATTGAAAGAAAGTAAGGGATTCAATCCCATcggttatgtttttaaatgtcttaacaATAGATTTAACTTCTTTTAATAGGGGTTAAAGCATATATTACATGCACAATAATGTGAGGAAAAGGAGCTGTGTCTGATCTGAAGCCTATGTCATGACACCTGaggttaaatattttttcacatcttcGTTTCTATGCCAAGGATCACACCTGGTGATATACTATTATTCAGTTCCATTGCCTACAGGATGTACTCACTGCTCATTGACCACAACATTTGGCAAACTCTTTTTCCAAGACTAGACATTTgagagcacagacacagactcgtattatatatatatatatatatat

Function

symbol description
tbx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein homodimerization activity. Acts upstream of or within animal organ development; pharyngeal system development; and positive regulation of secondary heart field cardioblast proliferation. Predicted to be located in nucleus. Is expressed in several structures, including cardiovascular system; mesoderm; pharyngeal arch; shield; and vestibuloauditory system. Used to study DiGeorge syndrome and velocardiofacial syndrome. Human ortholog(s) of this gene implicated in DiGeorge syndrome; tetralogy of Fallot; and velocardiofacial syndrome. Orthologous to human TBX1 (T-box transcription factor 1).

NR:

description
PREDICTED: T-box transcription factor TBX1 isoform X1

GO: NA

KEGG:

id description
K10181 TBX10, TBX7; T-box protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018630 True 3439 mRNA 0.47 7 16012287 16025098

Neighbor

gene id symbol gene type direction distance location
AMCG00018625 NA coding upstream 221390 15785893 ~ 15790897 (+)
AMCG00018623 NA coding upstream 234984 15772309 ~ 15777303 (+)
AMCG00018624 NA coding upstream 320546 15682455 ~ 15691741 (+)
AMCG00018620 NA coding upstream 342618 15668815 ~ 15669669 (+)
AMCG00018618 NA coding upstream 364112 15637974 ~ 15648175 (+)
AMCG00018635 NA coding downstream 231099 16256197 ~ 16278801 (+)
AMCG00018637 NA coding downstream 255735 16280833 ~ 16286663 (+)
AMCG00018638 ranbp1,LOC106580467,LOC107684983 coding downstream 270940 16296038 ~ 16298711 (+)
AMCG00018636 pgam5,LOC107089933 coding downstream 348798 16373896 ~ 16378701 (+)
AMCG00018641 NA coding downstream 393941 16419039 ~ 16434303 (+)
G117573 NA non-coding upstream 313422 15695426 ~ 15698865 (+)
G117574 NA non-coding upstream 317034 15693213 ~ 15695253 (+)
G117557 NA non-coding upstream 384568 15627339 ~ 15627719 (+)
G117521 NA non-coding upstream 482946 15492246 ~ 15529341 (+)
G117380 NA non-coding upstream 1112369 14855079 ~ 14899918 (+)
G117660 NA non-coding downstream 58255 16083353 ~ 16121445 (+)
G117768 NA non-coding downstream 723771 16748869 ~ 16749971 (+)
G117783 NA non-coding downstream 983800 17008898 ~ 17009246 (+)
G117801 NA non-coding downstream 1128684 17153782 ~ 17155824 (+)
G117804 NA non-coding downstream 1135664 17160762 ~ 17161040 (+)
AMCG00018602 LOC102789415 other upstream 1030582 14954564 ~ 14981705 (+)
G117383 NA other upstream 1224154 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 1235177 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 1600008 14408958 ~ 14412279 (+)
G117178 NA other upstream 1664546 14345090 ~ 14347741 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 1043114 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 1956042 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 2694108 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 2802499 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 2869237 18894335 ~ 18908956 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029940 tbx1 coding NC_007116.7 CM002889.2 15202495 ~ 15215483 (+)
grasscarp (Ctenopharyngodon idella) CI01000071_03446097_03455442 TBX1.L, TBX1, TBX1.S coding CI01000071 null 3445514 ~ 3455442 (-)