AMCG00018637


Basic Information

Item Value
gene id AMCG00018637
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16280833 ~ 16286663 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018637
ATGGAGACAAGTGAACTTATACCACCCCTCCCGCAAGAGCCACCTGATGCAATGAGTTTGGAGAGCCTTAATAGTCCCCCACCTTTACCGCCAAGCATACAGCCTCCACCACCTCCGCTGCAAACGTCCAGTGACGCAGAGGAAATGGACGTTAGCTCTGGTGgtgatggacagacagacaccccaGCAGGGGACGTTGAACCGATAGGCACAGCACAGCTCCTCGCGAAGGGATCCGCTTTGTTTACCAGCCGTGTTACAGATGAGCTAGAACCCAACTCCCTGAGTCCTAGAACCGCTCGGCACGCACCCCCTGTTACAAAATTCTTACCTGACTTAAAGTTACTGAAGGACGTCAAGATTAGTGTGAGCTTCACAGAGAGCAGCCGGAGCAAGGACAGGAAAGTGTTGTACACAGGGAAGGGGCAGGAGGTACAGGACCGTGCCCAGGCTAGTAATGAGGGCCTAAATGGGGAGTTGTGTGACGTGGACTTGGGCAGCTTTAGTGGGGAGAGTCAGTGTGGAACCGCTGTCAGCGCAGGCAAGAAGTGTGAGTACGCGGAGGGCGATTTGGAGAAGAAAGTAGAGTTTGCGGTTCTGGATGAACTGGAAGATTTCACAGAGAATTTTATGGAGACGGAAGATGGAGACCAAGGAGGTTTCCAGTCTGAAGTGATCGTTCAACAGGACCGTGCAGATGAGGAGACCCTGAATTATTCCTATGAGGAGGATTTTGACAATGACGTGGATGCCCTGCTGGAGGAAGGCCTGCCTGTACCTAAGAAGAAGATGCGCCTGGCAGAGGACAAGTACACCGGAGACAGTGACCACCAGTCTGACGGGGAGACCAGCGTCCAGCCAATGATGACCAAAATTAAAACCGTGCTTAAGAGTCGTGGCCGTCCACCCACTGAGCCACTGCCTGATGGATGGATCATGACATTCCATAACTCTGGCATTCCAGTCTACCTTCACAGGGAAACCAGAGTAGTTACCTGGTCTAGACCTTACTTCTTAGGAACAGGGAGCATCAGGAAGCATGATCCCCCGACCAGTAGCATTCCCTGCCTGCactacaaaaaaatgaaggaacacgaagaaagggaacaaaatgGTGAGGTGACCCCCAATCCGGAGAAATCACCTGAGAAGCCCGCGGAGGCTGTGGTGGACCCAGAGCGGGCGGACGAGCCGGACTCCACGGCCCCGGAGGAGTCCACTGCAGGGGCTGCTCCCGGGGTCCCGGAGGAAGGGGCCCAGTCTGCAGCAGCACCCTCGGAGGAGAGGGTCATCGAGACAGCGCAGGGGGCCTTGGGGCAAGTCAAGGCTAAGGTGGAGGTTTGCAAGGATGAATCGATAGAAATTGAGGAGTTTCGGAACTACTTGGAAAGGTGCTTCGATTTTGAGCAGGTCACCGTGAAGAAGTTTCGCACCTGGGCTGAGAGGAGGCAGTTCAACAGGGAGATGAAGAGGAAACAGGCGGAAGCAGAGAGGCCTATATTACCAGCCAACCAGAAGCTCATCACCCTGTCGGTTCAAGATGCACCTACCAAGAAAGAGTTTGTCATTAATCCAAATGGGAAGTCAGAAGTGTGCATTCTACACGAATATATGCAACGGGTCCTCAAGGTTCGACcggtttataatttttttgaatGTGAAAACCCAAGTGAGCCCTTCGGAGCGTCCGTCATTATAGATGGAGTGACATATGGCACGGGAACTGCAAGCAGTAAGAAACTGGCCAAGAATAAAGCTGCTCGAGCCACACTGGAAATCCTTATTCCTGACTTTGTCAAACAGACGTCTGAGGAAAAGCCCAAAGATAGCGATGAGTTGGAGGCGAGTAAAAATAAGAGAGTGGGGAAGCAGCTGGCCTCACAGAAAATCCTGCAGTTACTGCATCCGCATGTGAGAAACTGGGGGTCACTTCTCCGCATGTACGGCAGGGAGAGCAATAAGATGGTGAAAAAGGAAAATTCAGACAAAAGTGTGATTGAACTTCAGCAGTATGCCAAAAAGAACAAGCCAAATCTTCACATCCTGAACAAACTGCAAGAAGAGATGAAGAAACTGGCGAAAGAGAGGGAGGAAACCAGGAAGAAGCCAAAAATGACAATAATGGAATCGGCCCAGCCTGGTAGTGAACCCTTGTGTACTGTCGACGTTTAG

Function

GO: NA

KEGG:

id description
K18419 DCGR8; microprocessor complex subunit DGCR8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018637 True 2172 mRNA 0.52 11 16280833 16286663

Neighbor

gene id symbol gene type direction distance location
AMCG00018635 NA coding upstream 2032 16256197 ~ 16278801 (+)
AMCG00018630 tbx1,LOC102781442 coding upstream 255735 16012287 ~ 16025098 (+)
AMCG00018625 NA coding upstream 489936 15785893 ~ 15790897 (+)
AMCG00018623 NA coding upstream 503530 15772309 ~ 15777303 (+)
AMCG00018624 NA coding upstream 589092 15682455 ~ 15691741 (+)
AMCG00018638 ranbp1,LOC106580467,LOC107684983 coding downstream 9375 16296038 ~ 16298711 (+)
AMCG00018636 pgam5,LOC107089933 coding downstream 87233 16373896 ~ 16378701 (+)
AMCG00018641 NA coding downstream 132376 16419039 ~ 16434303 (+)
AMCG00018648 NA coding downstream 784691 17071354 ~ 17090022 (+)
AMCG00018647 LOC106592780 coding downstream 854726 17141389 ~ 17149356 (+)
G117660 NA non-coding upstream 159388 16083353 ~ 16121445 (+)
G117573 NA non-coding upstream 581968 15695426 ~ 15698865 (+)
G117574 NA non-coding upstream 585580 15693213 ~ 15695253 (+)
G117557 NA non-coding upstream 653114 15627339 ~ 15627719 (+)
G117521 NA non-coding upstream 751492 15492246 ~ 15529341 (+)
G117768 NA non-coding downstream 462206 16748869 ~ 16749971 (+)
G117783 NA non-coding downstream 722235 17008898 ~ 17009246 (+)
G117801 NA non-coding downstream 867119 17153782 ~ 17155824 (+)
G117804 NA non-coding downstream 874099 17160762 ~ 17161040 (+)
G117805 NA non-coding downstream 874851 17161514 ~ 17161723 (+)
AMCG00018602 LOC102789415 other upstream 1299128 14954564 ~ 14981705 (+)
G117383 NA other upstream 1492700 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 1503723 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 1868554 14408958 ~ 14412279 (+)
G117178 NA other upstream 1933092 14345090 ~ 14347741 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 781549 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 1694477 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 2432543 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 2540934 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 2607672 18894335 ~ 18908956 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_02520632_02526538 DGCR8 coding CI01000339 null 2519398 ~ 2526904 (+)