AMCG00018638 (ranbp1,LOC106580467,LOC107684983)


Basic Information

Item Value
gene id AMCG00018638
gene name ranbp1,LOC106580467,LOC107684983
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16296038 ~ 16298711 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018638
ATGGCAGAAACACCAGAAGAACCTGAGCCCACTACAGAAAATACAGAGGACACCAACCACGACCCCCACTTTGAACCGATTGTATCTCTCCCTGAGCAGGAGGTTAAGACATTAGAGGAAGATGAGGAggaattgtttaaaatgCGAGCAAAACTGTATCGGTTTGCATCTGAGAATGACCCTCCTGAGTGGAAGGAGAGAGGCACTGGCGATGTGAAGCTCTTAAAACACAAGGAAAAGGGAACCATCCGCCTGCTCATGAGAAGAGACCGGACCCTCAAAATCTGTGCAAACCACAACATTGCCCCTTTGATGGAGCTGAGGCCGAACGCAGGCAGTGACAGAGCTTGGGTCTGGAACACACACGCCGACTTCGCAGACGAACACCCCAAACCCGAAATGCTGGCCATCCGCTTCCTCAACGCAGAGAATGCACAGAAATTTAAGGCAAAGTTTGATGAATGCAAGGAAGAAGTTAGAAAAAGTTCAGGCAATGAGGAATGTGCCGACAAAGTGGCGGAGAAACTGGAGGAGCTTTCTGTAAAAGAGGAGAAGAGCAAGCAGCCCAGCGACCATAAAGGGGACAAGGAGCCCAAGAAGGAAGAGGCGGAGAACGCCCAGGGAAAGGACGAAGAGAAGCAGTAA

Function

symbol description
ranbp1 Predicted to contribute to GTPase activator activity. Predicted to be involved in positive regulation of mitotic centrosome separation. Predicted to act upstream of or within intracellular transport. Predicted to be part of nuclear pore. Predicted to be active in centrosome and cytoplasm. Orthologous to human RANBP1 (RAN binding protein 1).

NR:

description
PREDICTED: ran-specific GTPase-activating protein

GO:

id name namespace
GO:0046907 intracellular transport biological_process

KEGG:

id description
K15306 RANBP1; Ran-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018638 True 645 mRNA 0.50 6 16296038 16298711

Neighbor

gene id symbol gene type direction distance location
AMCG00018637 NA coding upstream 9375 16280833 ~ 16286663 (+)
AMCG00018635 NA coding upstream 17237 16256197 ~ 16278801 (+)
AMCG00018630 tbx1,LOC102781442 coding upstream 270940 16012287 ~ 16025098 (+)
AMCG00018625 NA coding upstream 505141 15785893 ~ 15790897 (+)
AMCG00018623 NA coding upstream 518735 15772309 ~ 15777303 (+)
AMCG00018636 pgam5,LOC107089933 coding downstream 75185 16373896 ~ 16378701 (+)
AMCG00018641 NA coding downstream 120328 16419039 ~ 16434303 (+)
AMCG00018648 NA coding downstream 772643 17071354 ~ 17090022 (+)
AMCG00018647 LOC106592780 coding downstream 842678 17141389 ~ 17149356 (+)
AMCG00018654 NA coding downstream 954444 17253155 ~ 17256857 (+)
G117660 NA non-coding upstream 174593 16083353 ~ 16121445 (+)
G117573 NA non-coding upstream 597173 15695426 ~ 15698865 (+)
G117574 NA non-coding upstream 600785 15693213 ~ 15695253 (+)
G117557 NA non-coding upstream 668319 15627339 ~ 15627719 (+)
G117521 NA non-coding upstream 766697 15492246 ~ 15529341 (+)
G117768 NA non-coding downstream 450158 16748869 ~ 16749971 (+)
G117783 NA non-coding downstream 710187 17008898 ~ 17009246 (+)
G117801 NA non-coding downstream 855071 17153782 ~ 17155824 (+)
G117804 NA non-coding downstream 862051 17160762 ~ 17161040 (+)
G117805 NA non-coding downstream 862803 17161514 ~ 17161723 (+)
AMCG00018602 LOC102789415 other upstream 1314333 14954564 ~ 14981705 (+)
G117383 NA other upstream 1507905 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 1518928 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 1883759 14408958 ~ 14412279 (+)
G117178 NA other upstream 1948297 14345090 ~ 14347741 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 769501 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 1682429 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 2420495 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 2528886 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 2595624 18894335 ~ 18908956 (+)

Expression


Co-expression Network