AMCG00018681


Basic Information

Item Value
gene id AMCG00018681
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17981140 ~ 17983017 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018681
GCAGGATGCGCAGCCGTAGTTGTGGTTGGGAATAAAACTACACGTCCCAGAATCCTTTCACCATTTCCGTTTCCGCTCTGGGGCTACTACCGCTTTCAACATGGCGCTCGGTCGGCAGATCTACAACTTGCTCTTCAAGAGGACCTCCACCTTCACCCTGACCATCGTGGTGGCGGCCGTGGTGTTCGAGCGGGCCTTCGACCAGGGCGGAGATGCCCTCTTCGAGCAGCTCAATCGCGGGCACTGGTGGAGACCCCCAGTAGGAGACCTCGGACCCCCAACCCCCGGGTCGCCATGCCCGGCAATAGACACTCAACTCAATTCCCTCCAGCCGCCACGACCAACAGCGGACACCACTCTGGCCATCATCCACCTGTGA
>TU147848
TTCCGCTCTGGGGCTACTACCGCTTTCAACATGGCGCTCGGTCGGCAGATCTACAACTTGCTCTTCAAGAGGACCTCCACCTTCACCCTGACCATCGTGGTGGCGGCCGTGGTGTTCGAGCGGGCCTTCGACCAGGGCGGAGATGCCCTCTTCGAGCAGCTCAATCGCGGGaaaCTGTGGAAACACATTAAGCACAACTACGAGAAGGAAGAATGACGTGCCTCTGTGCGGGACTGCGATCGGTCCTGATGCCATTCCCCAGCACTGGTGGAGACCCCCAGTAGGAGACCTCGGACCCCCAACCCCCGGGTCGCCATGCCCGGCAATAGACACTCAACTCAATTCCCTCCAGCCGCCACGACCAACAGCGGACACCACTCTGGCCATCATCCACCTGTGATTTATCGTTTAATGTATTGACATTTAATTAGTAATAAATACTCTTCAAACTCCTA
>TU147849
TTCCGCTCTGGGGCTACTACCGCTTTCAACATGGCGCTCGGTCGGCAGATCTACAACTTGCTCTTCAAGAGGACCTCCACCTTCACCCTGACCATCGTGGTGGCGGCCGTGGTGTTCGAGCGGGCCTTCGACCAGGGCGGAGATGCCCTCTTCGAGCAGCTCAATCGCGGGaaaCTGTGGAAACACATTAAGCACAACTACGAGAAGGAAGAATGACGTGCCTCTGTGCGGGACTGCGATCGGTCCTGATGCCATTCCCCAGCACTGGTGGAGACCCCCAGTAGGAGACCTCGGACCCCCAACCCCCGGGTCGCCATGCCCGGCAATAGACACTCAACTCAATTCCCTCCAGCCGCCACGACCAACAGCGGACACCACTCTGGCCATCATCCACCTGTGATTTATCGTTTAATGTATTGACATTTAATTAGTAATAAATACTCTTCAAACTCCTACAattcttaaatgtattgtttagcCCTGATCCTGTGTTCCCCATTTCACAATATTGCAAAAACACGTTTGATTAtggtttaattgtgtgtgtgggaggtggggaaatacaaatacaaaatccagACAATACCTTGTTCTACTGTAAACCAGATGCAACatgattcaaaatataaaacGAATGTAATGGC
>TU147850
TTCCGCTCTGGGGCTACTACCGCTTTCAACATGGCGCTCGGTCGGCAGATCTACAACTTGCTCTTCAAGAGGACCTCCACCTTCACCCTGACCATCGTGGTGGCGGCCGTGGTGTTCGAGCGGGCCTTCGACCAGGGCGGAGATGCCCTCTTCGAGCAGCTCAATCGCGGGaaaCTGTGGAAACACATTAAGCACAACTACGAGAAGGAAGAATGACGTGCCTCTGTGCGGGACTGCGATCGGTCCTGATGCCATTCCCCAGCACTGGTGGAGACCCCCAGTAGGAGACCTCGGACCCCCAACCCCCGGGTCGCCATGCCCGGCAATAGACACTCAACTCAATTCCCTCCAGCCGCCACGACCAACAGCGGACACCACTCTGGCCATCATCCACCTGTGATTTATCGTTTAATGTATTGACATTTAATTAGTAATAAATACTCTTCAAACTCCTACAattcttaaatgtattgtttagcCCTGATCCTGTGTTCCCCATTTCACAATATTGCAAAAACACGTTTGATTAtggtttaattgtgtgtgtgggaggtggggaaatacaaatacaaaatccagACAATACCTTGTTCTACTGTAAACCAGATGCAACatgattcaaaatataaaacGAATGTAATGGCTGAAGAGACCCTTCTTATTgatatgcataatatatatatataattatatatgtttagtATGTATCTTAGACCCCTTTTACAAAGAACCAAAGAACAACTGatgcctttttttaatgataaaggGGGTATCAAGTCTAATATAAATCATTAGTATGTATTTGCATGCTTTTtgggcatttaaaaaatagcaaCTTGAGATTTGTGGTTTTAGCTCTTGTATGAATTTGTCATAATGGCTTTGAATTGCAGAAATATTGCAGTTCAACCACATTGTACACTTCGAAGAGGCTTTCCAATACACCACACATCAGAGCTCTAGTGTGAATTAGATGGGATTGTTATTTGTCAAGGTGATTGGCGTTATGCTTCTTCCGTAAGGGACATTTAGAATTTGGTTGATATCCAGCTGTGGGTTGCTTTCCTTGCCTTTGAACTGTCGGAGGTAAAATTGCAGGGTCAGTTTCCGAGTCATGACTTTGAGTCCCAGGAAGGCAGCCAAGATCTCCGAGAGGATGAAGAGGAGGTAGATGATGTGGATGGCTCGCTCCAGCGGAAGGATGATGATCCCTTCGTCCATCAGGAAGAAAAGCACGATGGGGAGCTGGAACAGGAAGGTAAGGAGCCAAAAGCCGGCCAGCTCTGGCACCTGATAAAACAGTGGAACGAAAAATGGTGGGTGGAAAAAGTCAGTGGAAAGACTTAAATGAAATAGTT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055006 cardiac cell development biological_process
GO:0055011 atrial cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018681 False 379 mRNA 0.60 2 17981140 17982059
TU147848 False 455 TUCP 0.55 2 17981210 17982114
TU147849 False 644 TUCP 0.49 2 17981210 17982303
TU147850 True 1358 lncRNA 0.45 2 17981210 17983017

Neighbor

gene id symbol gene type direction distance location
AMCG00018678 LOC104923679,LOC100329495,LOC107386260,LOC102231850,LOC107599169 coding upstream 21615 17933745 ~ 17959525 (+)
AMCG00018679 nf2,nf2a,LOC108431713,LOC107726729,LOC107599150 coding upstream 114155 17840752 ~ 17866985 (+)
AMCG00018668 NA coding upstream 157540 17807007 ~ 17823600 (+)
AMCG00018673 NA coding upstream 177192 17797953 ~ 17803948 (+)
AMCG00018666 NA coding upstream 191700 17786712 ~ 17789440 (+)
AMCG00018685 prodha,LOC100695866,LOC108439536,LOC107373658,LOC106514456 coding downstream 40010 18023027 ~ 18035628 (+)
AMCG00018686 NA coding downstream 155028 18138045 ~ 18139541 (+)
AMCG00018698 NA coding downstream 362940 18345957 ~ 18437784 (+)
AMCG00018697 NA coding downstream 544726 18527743 ~ 18528121 (+)
AMCG00018693 NA coding downstream 579516 18562533 ~ 18571339 (+)
G117959 NA non-coding upstream 201 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 396028 17584751 ~ 17585112 (+)
G117813 NA non-coding upstream 728117 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 756531 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 819417 17161514 ~ 17161723 (+)
G118005 LOC101154678 non-coding downstream 234786 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 483351 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 691257 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 1473125 19456142 ~ 19456983 (+)
G118290 wscd2,LOC107597274,LOC107743343,LOC107696066 non-coding downstream 1484806 19467823 ~ 19473460 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 911470 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2999435 14954564 ~ 14981705 (+)
G117383 NA other upstream 3193007 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 3204030 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 3568861 14408958 ~ 14412279 (+)
AMCG00018702 NA other downstream 736189 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 844580 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 911318 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1240151 19223168 ~ 19234351 (+)
AMCG00018740 NA other downstream 1390455 19373472 ~ 19482092 (+)

Expression


Co-expression Network