AMCG00018740


Basic Information

Item Value
gene id AMCG00018740
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19373472 ~ 19482092 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018740
ATGGTGGCCAGGGGACGCGCACTCAGGTCGTCACTGTCCAGCAGTGGCCCTAGGGGGCCAGCAGTGTCAGTGATAAGGGTGGACACCAACAGGCTAGGGAACGAAGGCGGTGTATTAGGGAGGGAGCCCCTGAAAcagctcctccaggagcagCGGCTCCTTGGGGCTCCACATAGCGCAGTGAGTGCAGCCCCTGTGCGCCACGCAGACGCTCTGCACTCAGCCACCTGCCCTGCTGCAGACCCAGTAGGCGGACCAACTGGTGAGCCGGGCCACAACCAGCAGGACGCCGAGGCAAGAGAGGAATCCGTGAAGCCCTCACTGTCACTCTCCAAGCCCGAGGCGTCCCCGGTGGCTGCCATGATGCTCCAGCGTGGAGCCAAACCTTttcccagTGACAAGACCAGAAGCGGACAGTTGAAGAGCAACAACAGCTTCCTCTCCTTAGCTTACAAGTATCTCGTCTGTCACTGCTCTGTGAAGGGGTTTGCAACAAAGCATCCAGTTGAGGTTTCAATGCTAGGATACGCTGTGGCCCAGTGGGACAAGAACGGCCGAGGGCGGAATTGGAAAGAGCAGGGAGATGTTAACCTGGCCAATAACCGGCAGCAAGTCACTCGGCaaaattgcattaataaatCAAAGTCCCGTGCCCTACTGGAAGCAGCTCAGTCCAACACTATGAGTATAGTCGAGAACTCCAGGTTGCACGCCTGGTTAGATGGGGTCACACTCATGCCCACTACTGCCATGAGTCTCCCTCATGACGAGAGGGTCACAGTGACAAGAGAAAGTGACTTTGTCTGGACTGCCACGGGGAAGGAAACTGGGTCACCTGGGAATACAATCCAGAAGAGAAGAATCCACTACTATACTGATCTAAGGATGAATGTTACAGAGAACTATGAGTACATTGACTACTCTTTTCCGACCCATCCACCAACGCCAGAGGATACCTCAGATACCTCACCTCTTTTACCACGGCCAGTGAAAATTATACTTCTCTTGCTCTACATCACCACCTGTGTACTGGGGCTGCCTGGGAATGCCTTAGTGATCTGGATAACTGGCTTCAAAATGAAGCAAACAGTCAACACCATCTGGTTCCTCCACTTGGCCATTGCTGACTTTCTATACTGCACTTTTCTGCCCATTCCCATCTATAATCTAGTCAACGATTTCAACTGGGTCTTTGGGCTGCACATGTGTAAGGCCAATTCCTTCATACTGTTGCTCAACATGTACGTCAGTGTCTATCTCTTGGCCATTATCAGCTTTGACCGCTGTGTGTTAGTTATTTTCCCAGTTTGGTCGCAGAACAGCCGTACGGTGAAAAAGGCCACTGGGCTCGTTCTGGCTGCCTGGGCTGCCTCCAGCCTTGTGAGCATCCCCTCACTTGTTTTCCGTCACATCGTTCCTTTGGGAAATGGGATAACCCGTTGCTACTACAACTACGAAACCCCCTTTAATCACCAAGTGGTCGTATTCACCCGGCTCTTTTTCAGCTTTCTCCTTCCATGTGTGGTTATACTGGTTTGCTATGGCATCATCATGTGGAAATTAAAAACCAGGCACCTGGCCAAATCCTCCAAACCGTTTAAAATCATCCTGAgcattattttcacttttttcatcTGCTGGGTGCCCTTTTATGTAGCACAGTTATTAGAGATATTCTTCTGTAAAGATGGGGAAAGGTcgtgctttattattattcctgttgTGTCCTGTGTTGCTACTGTCAACAGTTTTCTCAATCCAGTGTTGTACGTTTTCATGGGCTCAGACTTCAGAGACACTCTCAAGCAGACCGTTCGCTCCAGGATGGAGAGCGCCTTCTCTGAGCAAACAGGTTTAAGGAGATTATCAGCAATGGTGTGTCCAGAATATTTGTATGATTATGACTATGACAATGAGACAAACGAAGCACTAGTGGATATCTTGGACTGTCTTCCAAAAGAAATTAACATAACAAGTAAGAGGGTACCACTAAAGTACATGTACACCGGGATGTACTCCTTGGTGTTACTGCTGGGGGTGTGTCTGAATGGCCTGGTGATCGTTTTGACTTGCAGGATGAAGAAGACGACTGGCACTATCTGGTTTCTTGGCTTGGCTGTCACAGACCTCACCTTCTGCGTGTTCCTGCCCTTCATGATCATCTATGCAATGAACGACTTCAACTGGACTTTTGGTCTCATCATGTGCAAGCTCAATTCCTATGTAATGTTCATCAACATGTTCTCCACCGCCCTCATCCTAACCTTCCTCAGCGTTCACCGCTGCTTTTCTGCCCTGAATGCCGACTGCTTTAAGAAGTGCTGCACCGCTCTGACAGCCACCAACATGGTGTGGGCCTCGTGGTTCATATCGGCGATTTTGAGCACCCCGTCGCTGGTGCTACGAGATATTGCCCAAACCCCTGAGAGAGTGATCTGTTTCGACAATTATACATACGGATTCCTGAACCTCAATACCACTGAAGGTAAAGTAAGAATCAAAGTTGTTATTTTAACCcgatttatttttggtttatttcttCCCTTTTTCATTATTGGCCTGGGCTCCAGCTTGGTGTCGCTGAAAAGCAACTACAAGTTCACATCCTCTAAGCCGTACCGGATTGTCCGTATCATGATTTTTGCATACTTCCTGTGCTGGGGGCCCTATCATGTGTTCATGCTAGTGGCCCTCCATTCTCGATTCCTCGGTGCAGACGTGGTCGCTTATGGCTTACCTGTTGGCAAGGACATGAAAATGTCATGGATGGAGGATATATTTGTCACAAAGGAACCAAACAAGTTGGAAGAAGCGAATTGA
>TU148213
TACACATGCATCTTGACGGATGTTAAAATAGGTTTGAACAGATTGCGTCAGATGTGAACCGCTAATTAAATTTACGTTATATTTCTACTTTGATTTGACGGTGACAATATTTAACATTAGGCTTAACGTGTATGCATATCCATGGCTTTCAACTGTTTGAGCAATCCCTGTTAAAGTTAAGTGTTAAACTTTCAGTTTCATTCTGACTGGAACAAAATCCCTAGGGAGCTGCGTGGGGAAAACAGCTGCATTTCGAGAATTAGTATTTAAGGggtttaaaagtttaaagagGGACTGATCGCATAAGTGTTTCTTTCTTATTcgtgagtatttttttttctctctctctcatggtgccatacacatacattattgtCTCGGGTTACATTTCTAGCAGAGAAAACTGCCAGGAGTGCATTGGAATATTACTGTGTGAAGCTGTGtggcatattttattattgtattttttcagACAGGTTTAAGGAGATTATCAGCAATGGTGTGTCCAGAATATTTGTATGATTATGACTATGACAATGAGACAAACGAAGCACTAGTGGATATCTTGGACTGTCTTCCAAAAGAAATTAACATAACAAGTAAGAGGGTACCACTAAAGTACATGTACACCGGGATGTACTCCTTGGTGTTACTGCTGGGGGTGTGTCTGAATGGCCTGGTGATCGTTTTGACTTGCAGGATGAAGAAGACGACTGGCACTATCTGGTTTCTTGGCTTGGCTGTCACAGACCTCACCTTCTGCGTGTTCCTGCCCTTCATGATCATCTATGCAATGAACGACTTCAACTGGACTTTTGGTCTCATCATGTGCAAGCTCAATTCCTATGTAATGTTCATCAACATGTTCTCCACCGCCCTCATCCTAACCTTCCTCAGCGTTCACCGCTGCTTTTCTGCCCTGAATGCCGACTGCTTTAAGAAGTGCTGCACCGCTCTGACAGCCACCAACATGGTGTGGGCCTCGTGGTTCATATCGGCGATTTTGAGCACCCCGTCGCTGGTGCTACGAGATATTGCCCAAACCCCTGAGAGAGTGATCTGTTTCGACAATTATACATACGGATTCCTGAACCTCAATACCACTGAAGGTAAAGTAAGAATCAAAGTTGTTATTTTAACCcgatttatttttggtttatttcttCCCTTTTTCATTATTGGCCTGGGCTCCAGCTTGGTGTCGCTGAAAAGCAACTACAAGTTCACATCCTCTAAGCCGTACCGGATTGTCCGTATCATGATTTTTGCATACTTCCTGTGCTGGGGGCCCTATCATGTGTTCATGCTAGTGGCCCTCCATTCTCGATTCCTCGGTGCAGACGTGGTCGCTTATGGCTTACCTGTTGTGACTATACTAGCAACCTGTAACAGCTGTATCAATCCTATGATCTACAN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018740 True 2820 mRNA 0.49 13 19373472 19482092
TU148213 False 1416 TUCP 0.42 2 19448626 19450628

Neighbor

gene id symbol gene type direction distance location
AMCG00018736 sart3 coding upstream 27714 19332490 ~ 19345758 (+)
AMCG00018739 NA coding upstream 45593 19326479 ~ 19327879 (+)
AMCG00018735 NA coding upstream 66732 19299948 ~ 19306740 (+)
AMCG00018734 NA coding upstream 77471 19289189 ~ 19296001 (+)
AMCG00018737 coro1c,LOC106584990 coding upstream 90506 19274909 ~ 19282966 (+)
AMCG00018743 rnf185,LOC102783490 coding downstream 123930 19606022 ~ 19612141 (+)
AMCG00018746 NA coding downstream 130533 19612625 ~ 19636734 (+)
AMCG00018745 NA coding downstream 194530 19676622 ~ 19677939 (+)
AMCG00018744 NA coding downstream 196679 19678771 ~ 19684562 (+)
AMCG00018754 dgcr2 coding downstream 205492 19687584 ~ 19701791 (+)
G118013 NA non-coding upstream 642660 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding upstream 697246 18674274 ~ 18676226 (+)
G118005 LOC101154678 non-coding upstream 1155373 18217803 ~ 18218099 (+)
G117959 NA non-coding upstream 1392533 17979011 ~ 17980939 (+)
G117887 NA non-coding upstream 1788360 17584751 ~ 17585112 (+)
G118304 NA non-coding downstream 94872 19576964 ~ 19579031 (+)
G118410 NA non-coding downstream 512034 19994126 ~ 19994329 (+)
G118566 NA non-coding downstream 797196 20279288 ~ 20299830 (+)
G118572 NA non-coding downstream 820578 20302670 ~ 20302958 (+)
G118601 NA non-coding downstream 895196 20377288 ~ 20381442 (+)
AMCG00018732 NA other upstream 139121 19223168 ~ 19234351 (+)
AMCG00018717 trpv4,LOC106585668 other upstream 464516 18894335 ~ 18908956 (+)
AMCG00018712 NA other upstream 533377 18827597 ~ 18840095 (+)
AMCG00018702 NA other upstream 652129 18719206 ~ 18721343 (+)
AMCG00018681 NA other upstream 1390455 17981140 ~ 17983017 (+)
AMCG00018762 NA other downstream 489047 19971139 ~ 19974730 (+)
G118557 NA other downstream 777285 20259377 ~ 20260940 (+)
AMCG00018781 denr other downstream 890127 20372219 ~ 20374812 (+)
G118623 NA other downstream 1032068 20514160 ~ 20514491 (+)
G118635 NA other downstream 1110644 20592736 ~ 20593016 (+)

Expression


Co-expression Network