G117521


Basic Information

Item Value
gene id G117521
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15492246 ~ 15529341 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147252
cgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacaactgtgcTAGTGGTTCAGTCGTTTGCTTTCAGCTTTGCCAAGTCtggaaggggaaaaataaaacggCACCCAACAACTGTTTGATTGCATCTGACAGGGTAATGCAGTGAAGGAGATGGGCTCAGCCAAACTTCATAACATCAACCAGCAGAGGTTGCGGCAGTGATGAGGGGCTGTCGCTCTTGGTGCCCATTTTGCCAAACGCCTCCACGCTCACTCTAGGTTTAAGGTATCCACGATGACCGACTGATGGATGGGGTTTAGGCGAAACAGACAAGCAAGAAAGTGCTACAGCTTCGGAACTAGACCTCTCGCCCAAGGGGATACCCAGGTCTGAGAGTGACCTATTAAGGTTCCACTTTCCCATTGACCCCCCACCTCCTAAGTGGTGTGAAAACATGAACAGCCATAAGGATAGCAGCATTCAGACTTccttaatttttatttgaatgaatgcTAAGTATCTAAGGTAACataatgcatgttttcacaAGATTTCGCCGAccagtacaaataaaaaaaggccgTTTGACTGAGCACGTGCCCCTGCAAATAAAGGTTTGGAGAATCAGGCTTTGCAATGACCAGAGCGCGAGAGGAGTACACACTGGACTGTCAGCAAAGCATTTCAGTGGTCTGGGAGGTGGGTACTTCTTAACATGTGACTTTCTACACGTCATTATGGCCCCTTGCTGAATGGGAACGAGGCAGAAAACATGCAAATGACAACTCCCTGTGTTAGACCACGGACAGTTTATCATGGGAAGTGATATGCTGTGCAAAacacacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagattagAGAATGGCACTTCGATAATGCACTGCTTAAAAAGACGAGTgcttttaagttgttttttggAAAGATGGTTTGGGAGCTTGCTTTAAAATTTAGATTATGTCTACAGCAAATCAGATTATTAATGTGAATTAAATCAATCTAATCCCTCCTGCATTTTAATGCACAACCCCATCTACTATATCTATAGGAAAGTGGGAGAATGATTCTTCACTATGCTCTTTATTCCAGACTCTTATCTGCTGCCCCTCaaatcaaaatcatttaaatagaaATCTAGATCATGAAGGCGCATCAATTTTAATCCCAGGTTTGATCTAGATATGTAATGGGTGATTCTCCAAGAAGAAAATCCAAAGTGCTAATGACTCTAATGATAAAATGACAGGGACCAATTCCAGCCCCCCGATACTGAATTTGCAGTGAAGTCAGGGCCACACCATCAACTCTCAACACCTCATGCAGGCTTTCAGTGTTTGCACTTCCCCATCAAACCATGGTCACGCAAAGGAATTTGATTTTAAGTCAAAATACACagagaagaaaggaaataatataatgaagTGACGAGGATGGTGGGCAGAGTCCATTCTGGTTTGAGGACAAATGCTGGGGTTTTGTCGGAGTTGGGGGAGTCTGGATGGGCAAGCCAAGACAAAACCATAGCACATCATCGAGGAAAAGCTGGCCAGAGGAACGACGGCATCGTAGCAAGATCAGTCCAGGAGAGCCCTGTggcgggtggggggggaagaagaatttatttttactagAGCATTTAAAtagtgggaaaaaaacaaacaccaagaGTTTGGAATAGAAGAGCACAACTGTGGTTAAAACAGAAGAGACATCAGTCCATATgaaaaaatctttcaaatggTAGAATCCAAAAATGGAGGAAGAGCTTGCTTTGAGTTCTTTTCATGGGATGTTCTTGCTTCATTGTGCAGACAAAAT
>TU147253
CAACAGGGTACAGTGATTTTATTCAGGCTTTTCTGGGTTACATGTGATTGCAGAAGTGAAAAACTACAGATTGACATCAGTGATTCAAGAGGGTTGGCTGTACCATTGGAGTAATTTAATATTACAGTAAAAACTGCCCTTAAGCGTTAATTTCATTGCACTATACAGCTGTAAACCGGTTTTAAAAACTTGTAATACAACTAACACCTTCTgggttttttttctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147252 True 1849 lncRNA 0.44 2 15492246 15529312
TU147253 False 226 lncRNA 0.35 2 15525714 15529341

Neighbor

gene id symbol gene type direction distance location
AMCG00018611 ppil2 coding upstream 23864 15430284 ~ 15468382 (+)
AMCG00018603 ufd1l coding upstream 537983 14949636 ~ 14954263 (+)
AMCG00018608 cldn5,LOC103357131 coding upstream 564722 14927162 ~ 14927524 (+)
AMCG00018600 NA coding upstream 658182 14831500 ~ 14834064 (+)
AMCG00018593 NA coding upstream 667488 14821991 ~ 14824758 (+)
AMCG00018619 NA coding downstream 54252 15583593 ~ 15585087 (+)
AMCG00018618 NA coding downstream 108633 15637974 ~ 15648175 (+)
AMCG00018620 NA coding downstream 139474 15668815 ~ 15669669 (+)
AMCG00018624 NA coding downstream 153114 15682455 ~ 15691741 (+)
AMCG00018623 NA coding downstream 242968 15772309 ~ 15777303 (+)
G117380 NA non-coding upstream 592328 14855079 ~ 14899918 (+)
G117389 NA non-coding upstream 695096 14796531 ~ 14797150 (+)
G117388 NA non-coding upstream 698007 14793885 ~ 14794239 (+)
G117387 NA non-coding upstream 698442 14792796 ~ 14793804 (+)
G117382 NA non-coding upstream 705759 14786025 ~ 14786487 (+)
G117557 NA non-coding downstream 97998 15627339 ~ 15627719 (+)
G117574 NA non-coding downstream 163872 15693213 ~ 15695253 (+)
G117573 NA non-coding downstream 166085 15695426 ~ 15698865 (+)
G117660 NA non-coding downstream 554012 16083353 ~ 16121445 (+)
G117768 NA non-coding downstream 1219528 16748869 ~ 16749971 (+)
AMCG00018602 LOC102789415 other upstream 510541 14954564 ~ 14981705 (+)
G117383 NA other upstream 704113 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 715136 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 1079967 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 1092707 14330841 ~ 14399539 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 1538871 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 2451799 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3189865 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 3298256 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 3364994 18894335 ~ 18908956 (+)

Expression


Co-expression Network