AMCG00019915 (barhl1b,LOC107708351,LOC107595696,LOC105902520,LOC107556939,LOC100712077)


Basic Information

Item Value
gene id AMCG00019915
gene name barhl1b,LOC107708351,LOC107595696,LOC105902520,LOC107556939,LOC100712077
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2869705 ~ 2876818 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019915
ATGGACGCGTCCACCAACGGCTCCAGCTTTGGGATTGACTCTCTGCTGTCTCACAGACCTGGAAGTCCGATTGTGTCCAAGGGGGACAGTTTAATGGGGGAATGCAGGTCTCCTCTGGAGCTGAGCCCGAGGTCCGACCTGGGCAGCGGCTGCTCGTCGCCCCCTTCCCCGCGGCGGGAGTGCGCTGAAGAGGCTGTGCAGAGACAAGGTCACCCTCTCGGGCTGGAGTCGCATCCACAGCACGGACAGATGTCCGGCGCCTCGCAGCCGCGGACAGTCACCTCGTCCTTCCTCATCAGGGACATCCTGGCGGACTGCAAGCCGCTGGCCGCCTGCGCGCCCTACTCCAGCAACGGACAGCCGGCGCAAGAGGCCGGGCGACTGGCGGCCAAAATTGCAGACGAGTTCCTGGACAAAGTGGATAAAATCCACAGCAACTCCTCCTCAGACACCGAGTACAAAGTGAAGGAGGAAGGCGACAGGGAGATCTCCAGCAGCCGGGACAGCCCCCCGGTCCGGCTCAAGAAGCCCCGCAAGGCGCGCACCGCCTTCACGGACCACCAGCTGGCCCAGCTGGAGCGCAGCTTCGAGCGCCAGAAGTACCTGAGTGTGCAGGACCGCATGGAGCTGGCGGCGTCCCTCAACCTCACCGACACGCAGGTCAAGACCTGGTACCAGAACCGACGGACCAAGTGGAAGAGGCAGACGGCGGTGGGACTCGAGCTGCTGGCCGAGGCCGGCAATTACTCCGCCCTGCAGAGGATGTTCCCCTCGCCCTACTTCTACCCGCAAAGCCTGGTGTCCAACCTGGACCCCGGGGCCGCCTTATACCTCTACCGGGGCCCCTCGGCGCCGCCCCCGGCCCTGCAGCGGCCGCTCGTCCCGCGGATCCTGCTCCACGGCCTGCAGGGAGCCAGCGAGCCGCCCCCGCCGCTGCCGCCGCTGTCCGGAGTGCTGCCCCGGGCCACGCAGCCACGGTGA

Function

symbol description
barhl1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain; neural plate; and retina. Orthologous to human BARHL1 (BarH like homeobox 1).

NR:

description
BarH-like 1.1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09360 BARHL; BarH-like

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019915 True 981 mRNA 0.67 3 2869705 2876818

Neighbor

gene id symbol gene type direction distance location
AMCG00019917 NA coding upstream 2741 2852209 ~ 2866964 (+)
AMCG00019916 gsna,LOC107708352,LOC107595697,LOC107556937,LOC107686887 coding upstream 59704 2790773 ~ 2810001 (+)
AMCG00019910 NA coding upstream 101642 2742701 ~ 2768063 (+)
AMCG00019907 NA coding upstream 199692 2666705 ~ 2670013 (+)
AMCG00019904 exosc2,exos2,LOC106566956 coding upstream 206545 2658045 ~ 2663160 (+)
AMCG00019921 NA coding downstream 33426 2910244 ~ 2918881 (+)
AMCG00019926 NA coding downstream 119046 2995864 ~ 3004905 (+)
AMCG00019925 NA coding downstream 139416 3016234 ~ 3020777 (+)
AMCG00019924 NA coding downstream 147571 3024389 ~ 3031475 (+)
AMCG00019930 LOC107573633,LOC104949698,LOC107679461,LOC108251755 coding downstream 253111 3129929 ~ 3141283 (+)
G59638 NA non-coding upstream 43068 2825591 ~ 2826637 (+)
G59625 NA non-coding upstream 81466 2787910 ~ 2788239 (+)
G59578 NA non-coding upstream 152790 2715528 ~ 2716915 (+)
G59557 NA non-coding upstream 235575 2583694 ~ 2634130 (+)
G59467 NA non-coding upstream 688636 2180603 ~ 2181069 (+)
G59646 NA non-coding downstream 6896 2883714 ~ 2885416 (+)
G59700 NA non-coding downstream 155060 3031878 ~ 3034341 (+)
G59714 NA non-coding downstream 230982 3107800 ~ 3109882 (+)
G59715 NA non-coding downstream 239700 3116518 ~ 3116819 (+)
G59716 NA non-coding downstream 240396 3117214 ~ 3117452 (+)
AMCG00019884 NA other upstream 1760709 1074816 ~ 1108996 (+)
G59305 NA other upstream 2424175 441598 ~ 445530 (+)
AMCG00019920 NA other downstream 85690 2962508 ~ 2969595 (+)
AMCG00019934 NA other downstream 364490 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 1946995 4823813 ~ 4856929 (+)
G60137 NA other downstream 2478954 5355772 ~ 5361863 (+)
G60132 NA other downstream 2481646 5358464 ~ 5359365 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031136 NA non-coding NC_007116.7 CM002889.2 29746319 ~ 29754339 (-)