AMCG00019921


Basic Information

Item Value
gene id AMCG00019921
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2910244 ~ 2918881 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019921
GGGGTCCTGAGGAGTCCTCCTTTCCTGTTTAGAAACGTCATCAAAACAACCGCCCTCGCCCACGTCATTTCCGGGAGACGCGGGTCTTATTTTCCTGTGGAAAATGGCGGCGTCGAGCCCAGATCGCGCTCTAGCCGGGGGAGGAACCGAGCCTGCGGCAGAAGCGGAGCCTGACTCGGATCCATGGGCGGGACTGGGGCCGATCGTCAAACGGGACCCTGTAGTTAAGCTTCAGAGCCCGGTGAGCGGCCTGGAACCGCTTTCGTGGTCCGAAGACCACCGACTCTCGGCCTCCAGCACGAATAGCATCTCGCTAATGGAGATCGTGTGCGACATCCACGGCTACGGCCAGGACCTGGTCATCCACCGGACCTCCATCCCCGTGCCGGACTCGCCCTGCGTGCTCAAGgtggGTCCGGAGGAGCTGGTGTCGGAGCTGAAGGAGAGGTTCGCCAACTCTAAAGACCCGTCGGTCAGCCAGCCCTTCATGCTGGACCGGGTCCTGAACCCATCGGCCGGGTCTCTGCCCCCCCTGCGCGGGTTCAAGTACACCAGCTGGTCTCCGCTGGGCTGCGACGCCAACGGCCGCTGCCTGCTGGCCTCCCTGACACTGGACAACCGGCTCACCATCCACGGCAACCTGAACCGGCTACAGTGGACCCCGCTGGTGGACCTGACGGAGCAGTATGCCGAGATGCTGGAGGAGAAGGACTACCAGCTGCTGGGGGCGGAGCCGCCACGGGGGGAGCTGCAGGACCCACCCGAATTCCAGCGGCGCCACCGGATGCAGTGCCCTGTGCGCATGGAGTGGTCCAGCGTCTGCACCACGCAGCAGGTACAGACCAACAACGAGTGCAAGGACGTGGGCACGGTGCTGCTGGCCGTGCTGCTGGAGAACGGTGACCTGGCCGTGTGGCAGTTCCAGCTGCCCTTCCATGGGAAGGACTCCGTCGTCTCCTGCAACACCATCCAGTCGGGCGTGTCAGCGCCCAGCGTGCTGGCCTGGTGGGAGTACGAGCACGGCGGGCGCAAGATGAGTGGCCTGATCGTGGGCAGCTCCGTGGGGCCCGTCAAGATCCTGCCGGTCAACCTGAAGGCCGTGAAGGGCTACTTCACCCTGCGGCAGCCCGTGGTGCTGTGGCAGGAGACGGACCAGATCCCTGTGCACAACATCAAGTGCATCTCCCTCTACCACCCCTACCAGAAGTGCAACTGCAGCCTGGTGGTGGCCGCCAGGGGCTCCTACCTCTTCTGGTGCCTCCTGCTGATCTCCAAGGCCGGCCTGAACGTGCACAACTCGCACGTCACGGGCCTGCACTCGACGAACATCTCCTCCATGACGGCCAGCCGCTACGGGGGCTCCATCTTCACCTGCTCGGCCGACGGCAACGTCAAGAAGCTGACGCCCATCTTCACAGACGTGGCCGTGATGTTCAAGCAGGAGCTGATCCGACTGCCTGACGGGGTGGCCGGCCGCAGGACGCACGGCATCGCGGTCAGTCCCAACGGGGCTTACCTGGCTCTGGTGACCACGGAGGGCCTGACCAACGGGCAGCACCCGGTCAGCCGGAGCTACCAGGTCCAGTTCGTCACCCTGAAGACTCCCGACGACGCGGCGGCCGAGCTGCTGGAGTCCACCATCCAGAACCTCTTCAAGCAGACGGACCTGCTGGACCTGGTGCGCTGGAAGGTACTGAGGGACAAGCGCATCCCTCCCATgctgcaggaggagctggacGAGAAGGTGCACACCTCGGGCTCCACCTACCTGTGGCGCTTCAAGCTGTTCCTCTTCCGCGTGCTCTACCAGTCCCTGCAGAAGGCCCCGGCCGAGGCGCGCTGGCGGCCGTCCCACGAGGACACCAAGGTCTTCATCGGCGATGAGGAGGGTGAGGAGGACAGCCAGGAGGCCGGCGGGGGGGCCTCCACCTCCGAGGGCGGCGGGGGCAGGGCGCTGGATGACGGGGCGGGGGGGGCCACAGAGGAGCAGATGAGCGAGATCATCGCCTGGATCGAGGCGGTGGAGTCGCACCTGACGCGGGAGCACATGAAGAGGGTGCTGGGGGAGGTGTACCTGCACACCTGGATCACCGAGAACACCAGCATCCCCACCCGGGGCGTCTGCGACTTCCTCATGAGTGACCCCACCTACGAGGACAGGGCCGCCAGGGTGCTCATCGGCCACATCTTCAAGAAGATGAACAAGCAGACGTTCCCGGAGTACTGCAGCTTGTGCAAGGAGGTGCTGCCCTTCACCGACCGCCGGCAGGCCGTCTGCTGCAACGGACACATGTGGCTCAGGTGTGTGCTGTCATACCAGGCCTGTCAGACGATCACGTACAGGAGGTGTTTGCTGCAAGACAGTATTGCCAGACATCCCGTGCCTGACGATCCCGACTGGATAAAGCGGATATTACAAGGACCCTGTACTTTCTGTGACTCCCCGCTGTTCTAGGGAAGGAACGGGGAGGGATTTTGGGGGGATCAAGCGAGACGAGACTGCTCGAGGCAAACAGACGCAACTCTCAACTTGACAGACGTTTCACACGGGAGACGCCGCTATCCtgataaattgttttttttttatcctgcgttatttggaaaaaaaaaaaaaaagtaaaagctttAAGCAGCCCTTAATATAAAAAACCCATCCCCTTGGAAAGGAAATCGCAGTTTCTACGCTGGAAAATATTGGAAACTGAAAGCACTCAAAAGGAAGCAGTTTGAGTAGAAATCGTCGGCTCATTTACGAACATTGTGAACATTGTTATGAAAGTGGCTTTTCCACATTACTctcgcccccccaccccattccTGTCAGTCACTCCGTTCGGAGAACAATATGCTCGATCAGTCCTGTAATTTCTCTGTAACACACTTTAATTCATCCCCAGGtctcgttaaaaaaaaaaaaaaaatacaaacgaAACAGCGTCTCGTTCCACACGCTCGGAGAGGAGTTCACACACAGCCGCGCCAAAGACAGAGCTCGGTTAAAAACTAATTTGGCCGCCCTCACGGGATCCCGGCTAATGAGATTCTGCCATAATGAGGGCGAGATCCTGCCGGCAGACGCAGGACTGATTTTAATTAAGGGGGTCGGAGTGCGCGTTGTTCGGTGTGATTAACCCTTCTCGGAGAACACGGGCCTGGGGAGGAGGTGTTCAGGACTGCGACACTCGGGACTCCCTCGCCTGCTTTCCATGACGCGCGGGTTCGTGGCCTCGGCGTGTCCCCGGACCCCCCGGAGAGGAGAGCGTGGCTGCACCGGGGACTCGGCAGCTCTGCGCTCGTGCTGTGGCGGGGTCAACCCAGATTGAAACCCCTATTCCAGAATGTTCCAGTGAAATAAGAACGatgtacatgtttattattattattattactactactattattattattatttcccgaTTTTATTATGTGTTACATATCCGGGTCAggggaggacagagagaaatGATTCGGAGGTTTAATAGTAATGCAAAGGAAGGCTGATAAATGGTAGAATTATTGAAGCCACCAGACGACTAGATCAGTTTTCCAGCACAGAGCGAGACCCGTTAATGGGATGCTAAACAGAAAACACGTAGCCAAagccagaaaaaacacacattttcgaAGCACTTTTGTTTTAGAGTCCCAGTATGTAAGCTATTTTGTGTTCACGGTCATTTCTTTTTGTTGCGCTTTATTAAATTGCCCACTCCATGTTTTGGGCGAGTAGAGCTGGTAATAAGGTGTATTGTTTTAGTCGTGTGGACCCTTCGGTTTCCTTTCAACTCGACCTGGGTGCTACACGGACACTTCTGGTGCGTCTGGCCGGCCGTTGCCTCATTTGAGACGATCATGATTTCACTAGACTGGGAAGAGCTTCCACACGGTGCCGACCGATCCGAAGCAACTGACCTAAAATTAAATAAGCCTCGCGCCCCGTACGGCACAAACGAGTTCGTTCCCCTCAGTGTGTAGCGGTGACTAGGAGAGCCGAGAAAGTTGTTCCCGTTTTGCGGCCCAGTGTTTCCTCACTACTGTGATCCTTGGGGTCTAGGAGCCCCCGATTAAAGGAAGCCTGATATACTACACCCCCGAATCCAGGCCCACACATGTCCCCTCGCCTCGTCCTGCGTGGTTTAGGCAGCCGATTTCATTCCCTGTCCATGGTGCTCTGCAGGAAGACGAACCCAGGGGCCGGAGCTCTTCGGGGTTGTGTGGCCCCCATTATCGCATGGCCCCAATTTTTAGCCAAgaatttgtgtatgtatttttgttgttgttgttcttgtaaaTAAACTTGGGTTTTTAAGTCTTTTGTATACAG

Function

GO: NA

KEGG:

id description
K11310 GTF3C4, KAT12; general transcription factor 3C polypeptide 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019921 True 4324 mRNA 0.57 5 2910244 2918881

Neighbor

gene id symbol gene type direction distance location
AMCG00019915 barhl1b,LOC107708351,LOC107595696,LOC105902520,LOC107556939,LOC100712077 coding upstream 33426 2869705 ~ 2876818 (+)
AMCG00019917 NA coding upstream 43280 2852209 ~ 2866964 (+)
AMCG00019916 gsna,LOC107708352,LOC107595697,LOC107556937,LOC107686887 coding upstream 100243 2790773 ~ 2810001 (+)
AMCG00019910 NA coding upstream 142181 2742701 ~ 2768063 (+)
AMCG00019907 NA coding upstream 240231 2666705 ~ 2670013 (+)
AMCG00019926 NA coding downstream 76983 2995864 ~ 3004905 (+)
AMCG00019925 NA coding downstream 97353 3016234 ~ 3020777 (+)
AMCG00019924 NA coding downstream 105508 3024389 ~ 3031475 (+)
AMCG00019930 LOC107573633,LOC104949698,LOC107679461,LOC108251755 coding downstream 211048 3129929 ~ 3141283 (+)
AMCG00019929 LOC103370734,LOC104955211 coding downstream 223566 3142447 ~ 3147034 (+)
G59646 NA non-coding upstream 24828 2883714 ~ 2885416 (+)
G59638 NA non-coding upstream 83607 2825591 ~ 2826637 (+)
G59625 NA non-coding upstream 122005 2787910 ~ 2788239 (+)
G59578 NA non-coding upstream 193329 2715528 ~ 2716915 (+)
G59557 NA non-coding upstream 276114 2583694 ~ 2634130 (+)
G59700 NA non-coding downstream 112997 3031878 ~ 3034341 (+)
G59714 NA non-coding downstream 188919 3107800 ~ 3109882 (+)
G59715 NA non-coding downstream 197637 3116518 ~ 3116819 (+)
G59716 NA non-coding downstream 198333 3117214 ~ 3117452 (+)
G59717 tbc1d13,LOC102788004,LOC106562828 non-coding downstream 198641 3117522 ~ 3117909 (+)
AMCG00019884 NA other upstream 1801248 1074816 ~ 1108996 (+)
G59305 NA other upstream 2464714 441598 ~ 445530 (+)
AMCG00019920 NA other downstream 43627 2962508 ~ 2969595 (+)
AMCG00019934 NA other downstream 322427 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 1904932 4823813 ~ 4856929 (+)
G60137 NA other downstream 2436891 5355772 ~ 5361863 (+)
G60132 NA other downstream 2439583 5358464 ~ 5359365 (+)

Expression


Co-expression Network