AMCG00019925


Basic Information

Item Value
gene id AMCG00019925
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3016234 ~ 3020777 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019925
GTGCGGCCCGTGTTTCCGGCGGAGTCGTTTTCGCGGCGGGACTGTCATGGCGGCGATCAGATAAAGCACAGATGCGTGAGAATAAAACGGGAAACCAACAGCATCACACGTTCAACCGCCAGATACGGAGATTTAGCGATGACATCTAACGATACAACACCGGCAGAGGACTCGGCAGACCCCGCGGGTCTCCGGGCCCCGGGCAGCACGGCGGTGCTGTCTCTGCCGCCGGAGCGGCTGGTGTGCGTGGAGTACCCCTGCCGGGTCCGCAGCGTGGGCAGGATGCTGGAGACCGTGGGGGGCGAGGAGGGCATGTCGAGGgcCTACGCCGACTCGACCAAACGTCTGGAGCTGAACTTCCGCCCGAGGGACCCGTACTGTCACCCGGTGTGCGGCAACCGCTTCCCCTCCACCAGCCTGGTGCTGCGGGTGCGGCGGCGGGTGCGGAAAGGGGGCGGCGAGCCGGGCAACGGGGCCCCCCCCGAGCAGGGCGACATGAGCATGGAGATCCTGGGCATCATTGGGACCACCTACAAGTTTCAAGGCATGGCTGACTTCCAGTACCTCGCCGTGCACTCGCACCCCGACGGCACCCAGACCTCCCTGTACGACAAGATCCTGCTGCGCCAGCCGGAGAAGAAGGAGTTTTTCGACAAGGACGTCCCTCTGTTTATCCCCCCTCCCATCTTCTCCCGCCTCGATAACCCTGTTGACTACTTCTACCGCCCTGAAGTCCAGCACagAGAAGGCTACACACCCCCTACGCTGTCCAGCGAGAATCTGATTGGGCTGAGCCGGGCCCGGCGCCCCCACAACGCCATCTTCATCAACTTCGAAGACAAGGAGGTGCCCATGGGGCCCCTGGAGGCCGCCGTGCAGAACTGGCAGCGGGTGTGCAACCACCCCAACGAGCGCCGGGCCGAGGAGGAGATGAGGAAGGCGTTCAAGGCCCAGGTCATTGCCAGTGATGGCAGAGACGTGTCTCTGCCATCACTGCTGTTCGAGATGCGACCCGTGTGGTCCCGCAACGCGGTGAAGAGCAACCTGGAGATCCACCCCGAGAAACTGAAGCTGCTGCTCCCCTACGTGGCCTATTacatgCTGACGGGACCCTGGCGCAGCCTGTGGGTGAGGTTTGGCTACGACCCCCGGAAGGACCCCAAGGCCAAAGCCTACCAGGTGCTGGATTTCCGGATCCGCTGCGGGATGAAGCACGGGTACACCCCCAATGACATGCCGGTGAAAGCCAAGAGAAGCACCTATAACTACAGCCTGCCCATTACCGTCAACAAGACCGtgCCCCAGCCTGCCAGCCTGCAGGAGATCACCCAGAGCCTGGAAGGGCCCTCGAATGCCAGCGGCCGCAAACCCGCCCCGCTGAGATACAAACTGAAGGAGTCGGCCTATGTCTTCCGTGAAGGCACCCTGCCGCCCTACCGCCAGATGTTTTACCAGCTGTGTGACCTGGAAGTGGAAAGCTTGAAAAAGATCATTTACCAGAACGacggggaggaggaggagtgcaACGAGCGAGACGGCTGGTGTGTCTCCAAAACCAGTGACCAGCTGCGGGACATCATGTCTGGCATGATTAAGCAGATCATCCGCTCCAAGAGACCAGCTCTCTTTCCCACTAAGGCCAAGCGCTCCTCCACCAGTAGTGCTGCAGGGGCCCTGGACATGGAGagtggggaggaggaagaggaggaggatgacgaGGAAGAGTTCCAGCCATCAGAGGGCAGCGACAATGAAATGGAGACCGAAATTCTTGACTATCTGTGACCCAGGTGGCCCCTGCCAGCCTGCCACTGCCTCCTGGTACCCGACTGGATGTGGAGAGGAGACTGGAGGAGCCCTGAGCCCCTGTCCCTCCCAGCAAGTCCACAGTCAGGAGGGGAAACTCCTGCAGGACAACGACTGGAGGCTCAGACGCGCTCTCCGCTCTACTGGACACCTGACGAAGGACAGCTCTCCTGCTCGATGACTCGAGTTTCTCAGAGGGGACTCCTGCAGTATCGGGAGACCTGAGTCTTCTCTTGAGCTCCAAAACAATGTAACGCTGAGTGTAATAAAAGGTTGTGTTTTTCTCGCATTGTTAACGCCACGTCTGcgtattttgttttccagttacTTTTGAAACTGTTCCCAAACATCTCTGTCACACGATGGA

Function

GO: NA

KEGG:

id description
K15202 GTF3C5, TFC1; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019925 True 2173 mRNA 0.60 12 3016234 3020777

Neighbor

gene id symbol gene type direction distance location
AMCG00019926 NA coding upstream 11329 2995864 ~ 3004905 (+)
AMCG00019921 NA coding upstream 97353 2910244 ~ 2918881 (+)
AMCG00019915 barhl1b,LOC107708351,LOC107595696,LOC105902520,LOC107556939,LOC100712077 coding upstream 139416 2869705 ~ 2876818 (+)
AMCG00019917 NA coding upstream 149270 2852209 ~ 2866964 (+)
AMCG00019916 gsna,LOC107708352,LOC107595697,LOC107556937,LOC107686887 coding upstream 206233 2790773 ~ 2810001 (+)
AMCG00019924 NA coding downstream 3612 3024389 ~ 3031475 (+)
AMCG00019930 LOC107573633,LOC104949698,LOC107679461,LOC108251755 coding downstream 109152 3129929 ~ 3141283 (+)
AMCG00019929 LOC103370734,LOC104955211 coding downstream 121670 3142447 ~ 3147034 (+)
AMCG00019932 NA coding downstream 128317 3149094 ~ 3157541 (+)
AMCG00019931 endog coding downstream 137820 3158597 ~ 3161191 (+)
G59646 NA non-coding upstream 130818 2883714 ~ 2885416 (+)
G59638 NA non-coding upstream 189597 2825591 ~ 2826637 (+)
G59625 NA non-coding upstream 227995 2787910 ~ 2788239 (+)
G59578 NA non-coding upstream 299319 2715528 ~ 2716915 (+)
G59557 NA non-coding upstream 382104 2583694 ~ 2634130 (+)
G59700 NA non-coding downstream 11101 3031878 ~ 3034341 (+)
G59714 NA non-coding downstream 87023 3107800 ~ 3109882 (+)
G59715 NA non-coding downstream 95741 3116518 ~ 3116819 (+)
G59716 NA non-coding downstream 96437 3117214 ~ 3117452 (+)
G59717 tbc1d13,LOC102788004,LOC106562828 non-coding downstream 96745 3117522 ~ 3117909 (+)
AMCG00019920 NA other upstream 46639 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 1907238 1074816 ~ 1108996 (+)
G59305 NA other upstream 2570704 441598 ~ 445530 (+)
AMCG00019934 NA other downstream 220531 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 1803036 4823813 ~ 4856929 (+)
G60137 NA other downstream 2334995 5355772 ~ 5361863 (+)
G60132 NA other downstream 2337687 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 3086217 6106994 ~ 6114196 (+)

Expression


Co-expression Network