AMCG00019957 (aif1l)


Basic Information

Item Value
gene id AMCG00019957
gene name aif1l
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4631041 ~ 4650566 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019957
ATGCCCTCCGACCAGAACCCGCAAGGGGGAAAGACCTTCGGATTATTGAAAGCCCAGCAGCGGGACAGACTGGAAGAGATCAACAAGGAGTACCTTGAAGATCAGAAGTACAGCGATGAGGAGGACCTGGCGGATAAGCTGGACTCTTTCAAAAACAAGTATGCTGAGTTTGACCTGAACGATCAAGGGGAGATTGACATGATGGGCTTGAAGCGCATGATGGAGAAGTTGGGCGTCCCCAAGACCCACCTGGAAATGAAGAAGATGATCTCTGAAGTGACAGGGGGCTCCAGCGAGACCATCTCCTACAGAGACTTTGTCAAGATGATGCTGGGAAAGCGGTCCGCGGTCTTGAAGCTGGTGATGCTTTTCGAAGACAAGGCCAATGGAAGCAGCTTGAAGCCTGATGGTCCCCCCCCAAAAAGAGACATTGCCAGCCTTCCCTAAAGGGGGGAGGGACCTGCGGACCATCTCTCACACTGTCCCATCCAGTGTCTTCTGTATGGGAGCATAAAGAGCCTTATTGAACATCGGGCTTCAGTTGACTAAGGAGACTCTGGGTAGACGGGAATTGTCTCAGTCCTAAGGAGGTGGCAGTGTACAAAgttaagacaaaataaacaacccTAGCTGTGAAGCAACACCATAAGAAATAGCtttttataaacaataatacaaatatatatttatattaaggataattcaatattttaaaatgaaagacacCTTCAACTCCAAGAACAgaattttatagttttattaaaatgacagaTGAGTGTTTTagcttaaaaacacacattcaaatatcaGCTGTGATTATAAATCGTTCCAAGGCTGTAAATGCTCTTCATCTAAATGTTATTTGTTGTAACGCCTGGTCATTTAAGGGTAGTTTTCCCTCATAAATTGACAAGTTTTGGCTTGCTTTCAGAGGTGTGCATTTCATCGAGTTTAGtgatgcattattttacatctgaatggattttgtttgctttgaaatgagTCTCATCGCATAGCAGTGTAAGAGATTGGAGTCCGATATCATCTGTCCTCTGTAGGATAGAAAGCTGCATGTTCTTCTACTTTGGGATCTTTCATAGTTTTTCAGTCCCCAGTTCAATTTGCATCCTCGTTGTTCTGGTATATACGTTCGCCATTATTTACATCTATGCGTATTGTACAACATTTAATCATTACTGGTTAAACTACTTTTCCAGAAAACAACTACTTTTTTTAATCCATGTCATGTACTACTTGCTTTTAACGCTGCAATTAAAAAAGGTAACTGCTGAATTAGTCAGACCAAGCTTGGCTGTGTATGGAACCCACTGGGCTTTAAAGCAGTGAAATGGTCAGAGTGAATTCATACTTCTGTTATTTCAGTAATGCGTCAGACATTTGTTGCATAATGAACACTCGTGCTCCCAAAAGCAAACCCTTACTCATACATAGGATAAAATCAGCTGTCCTCGCtgcttttaaattgtgatttatattaaaacatggtCCTCTTTCTCAAAATTAAATTTCTTTTTAAACCCTCTAAATTTGGAATTGGACATTTGAATCCACAGGTGTTTCTGCTCTGGCCAGTTTACTCACACAGGAGATGTATAGTGACCAATACACTAGTGCTCGAAGGCTTGCATGGTCAGGTGTCGGCTTGTTTTAACACAGTGAGCCCATGGTGCAGACGGCAGGGCTAAAGTGTGGTCAGGCAGGACTGGTGCAGCACTGTGGGCTTGCGTGTGCCTGGTACGCCACAGGGTTGCTGATGGGTGCCAAGGCAAGGAAACCCTGGCTCCATTCAGCCAATCACATGTTGCCCCTCAGTGCATCCGAGCTACAGTCAGCTGGGATGTCAATAAGACGTGAGCCAGCGATGTCTGGAATATATGAGCACAAGTTTCCAAAGGTTGAGCAAAACCATTGCTCTGGGACCACATTACTTTTTATAAACCCTTTCCTCAGCTTGATGTGTGAAGTACAGTTCCAGGTGTAGTTGGAAGACTAGCTTTTGCGCCCACTCCAGTTGCTGTCCTTTTGTTAttgatcattttatattttaaaatgtgcagcttGACAAGTCCGCACCCAAGTTAGCCTGCAGGTGATGGAAATGCAGATTTGCGTAAGGAGTGCGTTTGTGGCAGAACCTGTTAGTCATAATCCTAGTATATATAAGGTTTTACTGTGTTAAGAGTGTAGTATTTAAAAGTTACCCATGTTTCCAGTACTCCGGTTGTGAAGGGGGCAAGGGGTGGATGAGaagttgattttatttgttaaagttCTTGGTTTTTGCACATTTCTCATCCTAGCCCTTTTGCAGCAGTGAAACACACATTCTTCAAAGTCAGAAGAGATCAAATGAGctgttgtattgaaatgtatttctcccCGCATTGCAAGACGCATTGTACCAGACTCAAGGAAcacttttacattgtaaatgtttgtgtttttatgaaatCGGAAGCCCGATTGGTACAAAGCTTCCAGTTTAGGGGACCATCAGAGTGTTTGTTAGACCAACCCATTTCTTAACTTTATCGATTTTAAAAATTGGAAGCGATTTATATAGATCAGTTCAGACTGTATTaaatctgcatgaattaacacTGTATcaaagtgtgtatgtgtttctatCAGAGTTGTAAGGCCTGCATAGTTGCTTTGTTAAATGTAACTGCAATTAATCATAACCTCCATCCATACAACcccatatatataaatatatatatatatatatatatatat

Function

symbol description
aif1l Predicted to enable actin filament binding activity and calcium ion binding activity. Predicted to be involved in actin filament bundle assembly and ruffle assembly. Predicted to colocalize with actin filament and ruffle membrane. Is expressed in several structures, including alar plate midbrain region; fin; immature eye; nervous system; and periderm. Orthologous to human AIF1L (allograft inflammatory factor 1 like).

NR:

description
PREDICTED: allograft inflammatory factor 1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K18617 AIF1; allograft inflammatory factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019957 True 2760 mRNA 0.41 6 4631041 4650566

Neighbor

gene id symbol gene type direction distance location
AMCG00019958 NA coding upstream 9508 4603295 ~ 4621533 (+)
AMCG00019961 NA coding upstream 43100 4559306 ~ 4587941 (+)
AMCG00019959 lamc3,LOC107718641,LOC107700933,LOC107757520,LOC107596886,LOC107655895 coding upstream 75136 4524356 ~ 4555905 (+)
AMCG00019951 NA coding upstream 558994 4056495 ~ 4072047 (+)
AMCG00019948 ttll11,LOC107693816,LOC102779474,LOC107579646 coding upstream 1032486 3583073 ~ 3598555 (+)
AMCG00019963 NA coding downstream 7788 4658354 ~ 4677885 (+)
AMCG00019962 NA coding downstream 117549 4768115 ~ 4768663 (+)
AMCG00019965 LOC107672533,LOC107731020,LOC107552623,LOC107740807,LOC107587726 coding downstream 144867 4795433 ~ 4795807 (+)
AMCG00019966 uck1,LOC102793675 coding downstream 210529 4861095 ~ 4887003 (+)
AMCG00019969 NA coding downstream 239212 4889778 ~ 4896490 (+)
G59857 LOC100136012 non-coding upstream 591121 4039515 ~ 4039920 (+)
G59849 NA non-coding upstream 679631 3951130 ~ 3951410 (+)
G59845 NA non-coding upstream 784611 3845999 ~ 3846430 (+)
G59841 NA non-coding upstream 902344 3728372 ~ 3728697 (+)
G59840 dab2ipa non-coding upstream 907595 3722891 ~ 3723446 (+)
G59936 NA non-coding downstream 56998 4707564 ~ 4734675 (+)
G59955 NA non-coding downstream 99899 4750465 ~ 4752896 (+)
G59956 NA non-coding downstream 107719 4758285 ~ 4758647 (+)
G59959 NA non-coding downstream 146008 4796574 ~ 4800283 (+)
G60038 NA non-coding downstream 342072 4992638 ~ 5028847 (+)
AMCG00019934 NA other upstream 1379634 3241308 ~ 3251407 (+)
AMCG00019920 NA other upstream 1661446 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 3522045 1074816 ~ 1108996 (+)
G59305 NA other upstream 4185511 441598 ~ 445530 (+)
AMCG00019967 prrc2b other downstream 173247 4823813 ~ 4856929 (+)
G60137 NA other downstream 705206 5355772 ~ 5361863 (+)
G60132 NA other downstream 707898 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 1456428 6106994 ~ 6114196 (+)
AMCG00020000 NA other downstream 1532133 6182699 ~ 6187889 (+)

Expression


Co-expression Network