AMCG00019958


Basic Information

Item Value
gene id AMCG00019958
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4603295 ~ 4621533 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019958
GTTTGCCACTGCACAGACAACACCGCCGGAGACGCCTGCAACAGTTGCCTGGACGGTTACTATGGAAACCCTTCAGTCGGCCATGCCGGTGATTGCGCGCCCTGCCCCTGTCCGGAGCAGTCCAGCTGTGCGGAGGTGCCTGGCACGGGCGAGGTGGTGTGTACAGACTGCCCACCAGGCCGGAGGGGCACTCGGTGTGAACTGTGCGACGATGGTTTTTATGGCGATCCACGGGGGCAGTACGGCGCGGTGCAGCCCTGCGTCGCGTGCCAGTGCAGCGGGAACGTGGACAGAAATGCCCTCGGAGTCTGTGACCACGTGACCGGCCGCTGCCTCAAGTGCCTGTACCACACCGAGGGGGTGCACTGCCAGCGGTGCCAGGAGGGTTACTACGGCAACGCACTAGACCCGGACCCTGGCAACAAGTGCCGGCCGTGCAGCTGCAGCCCGTCTGGATCCGTCGTGTCAGTTCAAGGCTGTGACCCCCAGACcggtcagtgtcagtgtctgaGCCACGTGATGGGACGAGACTGCAGCCAATGCGAGAGGGGCTTCTTCAACCTCCGCCCCAGAGTGGGCTGTGAGAGGTGTAACTGCAGCACAACTGGAGCCGTCTCCCCAGCCTGTCACCCAATCACAGGCCGCTGTACATGTCGGCCGGGAGTGGAGGGGACAGGGTGCGACTCCTGTCGGAAAGGCTTCTTTAACTTTTCGCCCAGGGGCTGCAGGGCTTGTAACTGCAACCCCATGGGCTCCGTCACCATGCAGTGCCACGACAACGCCACCTGTGTGTGCCGGGAGGGCTTCGTCGGCTACAAGTGTGACCAGTGTGAACTCAATTTCTTCCACAACCGGCGCACACACCAGTGTGAGGAGTGCCCTGTGTGCTATAGCCTCGTGAGGGATGAGGCGGCCAAACTGAAGGCAGGGCTGCAGGCCTTGGAGAAACGGCTGCAGGGCTACGACTGCCGGAACCGCCATGGTTACAAGAACAACCTCATCCAGGGAGAGGGCGCCTGGACCAACGCCCTGGAAGACCTGCTTGCCATTCAAGATGCCAGGAAGGCCTTTGTGAAGGAGTTTAAGGAGCTGGAGGAATCGGTGGGGAGGGTGCAGGCAGGACTCAGCACCACGACTCTGACGCTGAATTGCAGCCGGGAGGAGAGCGCCGGCGTGTGCAGGATCTTGGCCGACACCTCCTCCGCCACTCGCTCGGCACAGAGGCAGCTGCAGGAGGCCGCACAGACGCTGGCCAGTATGGTCATTCCTTTCGAAGCGCCAGCGGGCCCAAACCAATGGACAGTGATGGTGAAGGAATTCCGGACCCTCGCAGTTGGTCACAAAGAAGTGGGAGATTATATCGAATCAATAGCGCAGAAAGCTTTCACGGCATCAAACCAGACCTATGCTCTGCTCCACGCGTTTCTAGAGAACAATTCCACGGAGACGCACATTAGGTCTCTCGCAGAGCAgTTCTTAGAAATGCATCAAGCCAAAGACAATTTGACACTCTCAGTGAATGAGATGTTAACAGAAGCCAACAAAACCTACGTTTCAGTCCAAAAGACCCATTCTGAGATGGCACAAGTCTTACTCAATCTCACGGCCTTCCAACAAGAAATAACACCAGAGACCAATTTCACCATCACTGATTTGCAACTAGAAGATGTGagtaataaaacaatggaaTTGGATAAATTAATAGAGTCCAAAGATGCACTGATCGATAAAATACTGCTGGGGATTCAGCCACGTGTGGAATCGGTAGAGAAGAATATGGAGACCATCCAACAACACGATCAGTGGGCAGCTCGAGTCAGAGAAGCCAAATCCACGGCCGAGTCTTCGGTTGTGAAGGGGAAGGAAGTGGAGGCTGAAGCCAGCGCTTTGGTAAAAGAGTTGGAAGATATGAAGAAAACGTGGCCACGCAAGACTGCCCAAATCAAGGCCTCCGTGAAGAAGGGAAAAATAGTGAAGGAGAAGATTCTGTCAGAttcaaagaaaaagacaaaacagggAGAGAAGATAATAAGACCTGCACTGGACAACTCTACCCTGGCCAACGCCACGGCCACGGAGGCTGAGAGCATGGCGAGCGGAGCCACCAAGGGCGCCAGGGGAGTTCTCTCTCAGGCCAGGGAAGCCCGTGGCGACTCACTGCACTTGAACTTCACTGCTAACGCCATCCTTCACAAACTCACAGACCAGGAGGGCAGAACCGCGCAGCTGAGCAGAGAGATGGGCGAAATAGAGGAGGTAGCAGATACAGCTGGGGATGCAAAAGACAACATTGAGACGGCCAAGCGCTACCTGGAGCAGTATGCGCTGATACTGTCGGAGCTGCTTGACGATATAGaagaaaacaaagcagacGAGCAGTTGGACCGGATCTTAAACGAAACCGCGACCCAGCTGGGGGCTCTGAGGCGCAGGGTGGAGAGCCAGAGTCTGGACGAGAAAATACGGGCCCTGCAGGAGGCGGCCAGGCAACAGCAGTCCGAGCTGACGGCCGTGGACAAGGACATTGTGGAGATCCTGGTGGAAAAGACAAGCCTGGAGGACATCGCCCTGAATCTGCCAGAGGGGTGCATGGACGGGCCGAAGACTGGGAGGCTATAGGAGGGTGGGGGATATAGTGAGAGTACTGATGGTTCAATCGCACTTTCAATTACCCTGTGCCACTACAAGACTGTGTCAGCCGACTCCTTTCACGACCTCAAGTACCAGTCAATGCCTAGAAAGGGAACGACAGCGCAGCAGTGCAGTCGCTGTATCCTGTGGCATACTTCCAGCTTTCTAAACATCTCTCCTTTGCAGTGTCACAGAAGGGGAGGCACACACGTCAGCTGAGCTTTCATGTCAGTattcgttgttgttgttgttgttgttgttttctttctcgctttattttttattttttaccgtAAAACAAAGTGGCAAGAAATGAATTTTAGCATTCTGATTGATCTCCATTTGTACGTGATTTCTGTCTCTGGGATGGCATTGGTAAAGGAGAACTTGAtatgaaaggaaatgtattcattCTCTGGATTGCGTTTCACGGCAGGCTTTCACAGGGAAGATGGATGTATATTACTAAGaaaaagttgtgtttttgtaactTTCATTTTAACTACAATGAAGTCGGCTCAAAGCGTTCTTTCCAGTGGCTTCTTATCTAGAGACCTCATTAAGGCTTTGgctgtttttaattagaatagtttaattaaagagCAGCACTTTTAGCCTCTATTTGTACTGCACTATTACAGCACCGCTCCTGCAAGCCTGGCATCGTATTGttcttttcaattttaaagCTCCTGTGTTGTATTATCAGTTGTAAAAATGTGGCAGCGCTTGCCTAAGTGCCGGTGAAATGTAACGGGAGAAAGAACTGCTGACTAATGCAATTATGTCTCGGTCGCATTTTTCCTTTGTCAGATATAATGAAAGCACAGTGATGGcctcctccacacacaacagagacagaatgtttttttgagTTCTCCCAATTTAATTGTGATCTTCAAATAATGACGTTTTGGTTGATAGGTTCGCGGTTTAATTAATCCAATAACTCATCATGAAGTTAGTGTGGAACAAGGAGGTGAAATACTTCGCAAAGTTAGAGAAGaacttttattttgctgcagaACAATTTCATTGCGGAATCAGAAAAGAAATACTGGATGGATTTgatatttgtctttgttgtaTATTGGCCCAGCTTGCTTTTACGAGTTGAGAGGAGACTCCAGGGCAGTTATATAAAGTATACTTCTTTCAGTGCAGTAATTTGATTCATTATAGCCTAAGATAACTAACATTATTACCCTGTTTGACCTCTGGGGGGCATTCTACTTCAAAGTTCAATACAACTGAGTGTCCAACtgcttataaaataaagtatacattcttaaaaattgGTTTATTGTAATCAATGTACATTTACCATctctacaaaattaaaaacaatatacatatttacaagaAAGGCATAACAGTTATAAAGCACAATTCATACACCTACACCTGTATTGTGCTCTAATCTTTGAATGGAGTGACTTGATTTGTGAACCAGATTATCTTAATTAAAGTCCTGCTCTATCAAA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019958 True 4115 mRNA 0.50 16 4603295 4621533

Neighbor

gene id symbol gene type direction distance location
AMCG00019961 NA coding upstream 15354 4559306 ~ 4587941 (+)
AMCG00019959 lamc3,LOC107718641,LOC107700933,LOC107757520,LOC107596886,LOC107655895 coding upstream 47390 4524356 ~ 4555905 (+)
AMCG00019951 NA coding upstream 531248 4056495 ~ 4072047 (+)
AMCG00019948 ttll11,LOC107693816,LOC102779474,LOC107579646 coding upstream 1004740 3583073 ~ 3598555 (+)
AMCG00019936 usp20,LOC106562719 coding upstream 1368880 3211257 ~ 3234415 (+)
AMCG00019957 aif1l coding downstream 9508 4631041 ~ 4650566 (+)
AMCG00019963 NA coding downstream 36821 4658354 ~ 4677885 (+)
AMCG00019962 NA coding downstream 146582 4768115 ~ 4768663 (+)
AMCG00019965 LOC107672533,LOC107731020,LOC107552623,LOC107740807,LOC107587726 coding downstream 173900 4795433 ~ 4795807 (+)
AMCG00019966 uck1,LOC102793675 coding downstream 239562 4861095 ~ 4887003 (+)
G59857 LOC100136012 non-coding upstream 563375 4039515 ~ 4039920 (+)
G59849 NA non-coding upstream 651885 3951130 ~ 3951410 (+)
G59845 NA non-coding upstream 756865 3845999 ~ 3846430 (+)
G59841 NA non-coding upstream 874598 3728372 ~ 3728697 (+)
G59840 dab2ipa non-coding upstream 879849 3722891 ~ 3723446 (+)
G59936 NA non-coding downstream 86031 4707564 ~ 4734675 (+)
G59955 NA non-coding downstream 128932 4750465 ~ 4752896 (+)
G59956 NA non-coding downstream 136752 4758285 ~ 4758647 (+)
G59959 NA non-coding downstream 175041 4796574 ~ 4800283 (+)
G60038 NA non-coding downstream 371105 4992638 ~ 5028847 (+)
AMCG00019934 NA other upstream 1351888 3241308 ~ 3251407 (+)
AMCG00019920 NA other upstream 1633700 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 3494299 1074816 ~ 1108996 (+)
G59305 NA other upstream 4157765 441598 ~ 445530 (+)
AMCG00019967 prrc2b other downstream 202280 4823813 ~ 4856929 (+)
G60137 NA other downstream 734239 5355772 ~ 5361863 (+)
G60132 NA other downstream 736931 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 1485461 6106994 ~ 6114196 (+)
AMCG00020000 NA other downstream 1561166 6182699 ~ 6187889 (+)

Expression


Co-expression Network