AMCG00019959 (lamc3,LOC107718641,LOC107700933,LOC107757520,LOC107596886,LOC107655895)


Basic Information

Item Value
gene id AMCG00019959
gene name lamc3,LOC107718641,LOC107700933,LOC107757520,LOC107596886,LOC107655895
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4524356 ~ 4555905 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019959
ATGGATAAAGTAATGCTTTGGCTGCTGGTCCTCAAGCTTCATTCTTCCTCAGTTTCAGGAGCCATGGATTCTTGCTATGAAAGCCAAGGAGCTGCAAGTCGGTGCATGCCCAAGTttgaaaatgctgcttttaaCAGAACTGTGATGGTGTCCAACGTCTGTGGATCTCCACCAGAGGACTTCTGTACGCAGACCGGCTCGACCAGGTCATGCCATCGCTGTGACTCCACGGATCCTCACCTGCACCACAATGCCACCTACCTGAGTGACTTTCACAATGATGAGGAGTCGACCTGGTGGCAGAGTCAGTCCATGTTTTACGGGGTCCAGTATCCCAATTCAGTGAATATAACTCTGCACTTGGGGAAAGCCTATGAAATAACCTATGTCCGGCTGAAGTTCCACACGAGTCGACCAGAGAGCTTTGCAATCTATAAGAGGACCCGCGAGGACGGACCCTGGCTCCCGTACCAGTACTACAGCGCCTCCTGCAGGAAGACCTACGGCCAGACCAATAAAGGGTACCTACGCCCCGGGGACAACGAGCGCCTGGCCACCTGCACCGACGAATTCAGCGACATCTCCCCGCTCACCGGAGGGAACGTGGCCTTCTCGACTCTCGAAGGGAGGCCGAGTGCTTACAACTATGATCAAAGCCCTTTGCTTCAGGAGTGGGTGACAGCCACTGATCTCCTAATTTCCTTGAACAGACTCAACACCTTTGGGGATGAATTCTTCAAGGACCCCCAGGTTCTCAGATCCTATTACTACGCCATCTCGGATTTCTCGGTGGGAGGCAGGTGCAAGTGCAATGGCCACgcgaGCCCTGGGCAAGGGCAACAGCTGATTCAGCTAATGAATGCCTCCGTGAGTACCAATGTCCACCGGCATCACCGCAGAGGAGCCCGGTTTGCCAAGGAACGAGGCCTCAGACCTGCACCTATAGAAGAGATGTAG

Function

symbol description
lamc3 Acts upstream of or within motor neuron axon guidance. Predicted to be located in extracellular region and membrane. Predicted to be active in basement membrane. Is expressed in several structures, including fin bud; myoseptum; nervous system; optic fissure; and vasculature. Orthologous to human LAMC3 (laminin subunit gamma 3).

NR:

description
PREDICTED: laminin subunit gamma-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019959 True 957 mRNA 0.54 5 4524356 4555905

Neighbor

gene id symbol gene type direction distance location
AMCG00019951 NA coding upstream 452309 4056495 ~ 4072047 (+)
AMCG00019948 ttll11,LOC107693816,LOC102779474,LOC107579646 coding upstream 925801 3583073 ~ 3598555 (+)
AMCG00019936 usp20,LOC106562719 coding upstream 1289941 3211257 ~ 3234415 (+)
AMCG00019937 med22 coding upstream 1317000 3201986 ~ 3207356 (+)
AMCG00019935 NA coding upstream 1328141 3193787 ~ 3196215 (+)
AMCG00019961 NA coding downstream 3401 4559306 ~ 4587941 (+)
AMCG00019958 NA coding downstream 47390 4603295 ~ 4621533 (+)
AMCG00019957 aif1l coding downstream 75136 4631041 ~ 4650566 (+)
AMCG00019963 NA coding downstream 102449 4658354 ~ 4677885 (+)
AMCG00019962 NA coding downstream 212210 4768115 ~ 4768663 (+)
G59857 LOC100136012 non-coding upstream 484436 4039515 ~ 4039920 (+)
G59849 NA non-coding upstream 572946 3951130 ~ 3951410 (+)
G59845 NA non-coding upstream 677926 3845999 ~ 3846430 (+)
G59841 NA non-coding upstream 795659 3728372 ~ 3728697 (+)
G59840 dab2ipa non-coding upstream 800910 3722891 ~ 3723446 (+)
G59936 NA non-coding downstream 151659 4707564 ~ 4734675 (+)
G59955 NA non-coding downstream 194560 4750465 ~ 4752896 (+)
G59956 NA non-coding downstream 202380 4758285 ~ 4758647 (+)
G59959 NA non-coding downstream 240669 4796574 ~ 4800283 (+)
G60038 NA non-coding downstream 436733 4992638 ~ 5028847 (+)
AMCG00019934 NA other upstream 1272949 3241308 ~ 3251407 (+)
AMCG00019920 NA other upstream 1554761 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 3415360 1074816 ~ 1108996 (+)
G59305 NA other upstream 4078826 441598 ~ 445530 (+)
AMCG00019967 prrc2b other downstream 267908 4823813 ~ 4856929 (+)
G60137 NA other downstream 799867 5355772 ~ 5361863 (+)
G60132 NA other downstream 802559 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 1551089 6106994 ~ 6114196 (+)
AMCG00020000 NA other downstream 1626794 6182699 ~ 6187889 (+)

Expression


Co-expression Network