AMCG00019961


Basic Information

Item Value
gene id AMCG00019961
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4559306 ~ 4587941 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019961
ATGCACATAACCCTGAACTACATGTCATCCTGGGTAGGGTGTAATTGCAGCAGGCGATCGGAGGAGTGCTTCTTTGACGCCGAGCTGTACCGCAGTACCGGCCACGGCGGCTACTGTGAGAACTGCCGGGACGGCACGGCTGGGCCACACTGTGAGAGGTGCGAGGACAACTTCTACCGCAGCGATCCTCGAGATGTCTGCCTCCCGTGCAACTGCAACGTTTTAGGATCGAGAAGTGTGCAGTGCGGAGGTGACGGGCGCTGTGTCTGTAAAGCAAGTGTAACCGGAGAGAAATGTGACAGCTGTCAGCCCGGATACCATTCACTCACCGCCAGCGGCTGCAGTGAAGCAGCCCACAATGCGGCTGCCGTGCTGCTCCAGGGGTCAACCATAGTACCGTCTCCCCAGCGCACTGGCATGACAGCTGCCTGGATTCAGCTAAACACAGACGGGTGGACAGGGGTCTTTGCCACAGGACTAGAGTTCCCCTTGATCTGGAAGAAAGGTGAGGTCTATCTGCTCCCGTACAGCGAGGACGACATTGGTTTCTATAAAGCACCAGAGAAGTTTCTGGGGAACAAGCTGTTGAGTTACGGCCAGCCACTCTCCTTCACCTTTCAGGCGGAGAGCTTGGAGCTTCTTCCGCAGTCAGTGACTGTGGTCCTGCAGGGCTCCGGGTTGACCATATCTGCCCTCCTCTCACCGCTGCAAGGAGAAGAACCGAGCTCTGTTCTTCAGCACACGTTCGTACTCAGTCTTGTACTAATTGAACCAAGCACGAATCGTCAGTATACATTCAGCAAGCAGAGGGGGGCCCGATTCCCTTATCCAGaTACGTCTCAGCTCTCTGGGGTCACCCTGCTCTCGGCTGCTCCCAGTCTTTGGACCAGCGCTCCCTGGGTGGAGGAGTGTGTTTGCCCCCAGGGCTACGCGGGGGAATTCTGTGAGCGGTGCGCCTCGGGATACAAGCGTGAGATTCCCAACGGTGGCCCCTTCACCCGCTGCCTTCCCTGTACCTGCAATCAGCACGGCACCTGTGACCCCGAAACAGGTCAGAGAGCCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019961 True 1065 mRNA 0.58 7 4559306 4587941

Neighbor

gene id symbol gene type direction distance location
AMCG00019959 lamc3,LOC107718641,LOC107700933,LOC107757520,LOC107596886,LOC107655895 coding upstream 3401 4524356 ~ 4555905 (+)
AMCG00019951 NA coding upstream 487259 4056495 ~ 4072047 (+)
AMCG00019948 ttll11,LOC107693816,LOC102779474,LOC107579646 coding upstream 960751 3583073 ~ 3598555 (+)
AMCG00019936 usp20,LOC106562719 coding upstream 1324891 3211257 ~ 3234415 (+)
AMCG00019937 med22 coding upstream 1351950 3201986 ~ 3207356 (+)
AMCG00019958 NA coding downstream 15354 4603295 ~ 4621533 (+)
AMCG00019957 aif1l coding downstream 43100 4631041 ~ 4650566 (+)
AMCG00019963 NA coding downstream 70413 4658354 ~ 4677885 (+)
AMCG00019962 NA coding downstream 180174 4768115 ~ 4768663 (+)
AMCG00019965 LOC107672533,LOC107731020,LOC107552623,LOC107740807,LOC107587726 coding downstream 207492 4795433 ~ 4795807 (+)
G59857 LOC100136012 non-coding upstream 519386 4039515 ~ 4039920 (+)
G59849 NA non-coding upstream 607896 3951130 ~ 3951410 (+)
G59845 NA non-coding upstream 712876 3845999 ~ 3846430 (+)
G59841 NA non-coding upstream 830609 3728372 ~ 3728697 (+)
G59840 dab2ipa non-coding upstream 835860 3722891 ~ 3723446 (+)
G59936 NA non-coding downstream 119623 4707564 ~ 4734675 (+)
G59955 NA non-coding downstream 162524 4750465 ~ 4752896 (+)
G59956 NA non-coding downstream 170344 4758285 ~ 4758647 (+)
G59959 NA non-coding downstream 208633 4796574 ~ 4800283 (+)
G60038 NA non-coding downstream 404697 4992638 ~ 5028847 (+)
AMCG00019934 NA other upstream 1307899 3241308 ~ 3251407 (+)
AMCG00019920 NA other upstream 1589711 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 3450310 1074816 ~ 1108996 (+)
G59305 NA other upstream 4113776 441598 ~ 445530 (+)
AMCG00019967 prrc2b other downstream 235872 4823813 ~ 4856929 (+)
G60137 NA other downstream 767831 5355772 ~ 5361863 (+)
G60132 NA other downstream 770523 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 1519053 6106994 ~ 6114196 (+)
AMCG00020000 NA other downstream 1594758 6182699 ~ 6187889 (+)

Expression


Co-expression Network