AMCG00019962


Basic Information

Item Value
gene id AMCG00019962
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4768115 ~ 4768663 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019962
ATGCCTGCACACCAGAGTAGATCCCGGACCAGAGATCGAAACAATGTCTTAAACAGACCCGAGTTCATGTCTCTGAACCAGCCCTTGAGGACCAACACCGCAGAACTTAGGAGCTCCATCCGGCGGCATGCTGCCCAGCCCGGACCGTCCAAGCACCCGCAGGGCCAGCAGCCGGAGTTTCCGCCCCAGGAGCCGAACGACAACGCCAAGGACCGGAGGGAGTCTTTGAAATTGCCCGAAGAGGACTGCATGCAACTTAACCCCTCGTTTAAGGGGATAGCAAtgaactccctcctggccatcGACATTTGCTTGTCCAAGCGGCTGGGGGTCTGCGCTCACAACACCTCCTCCTGGGGCAGCGTCCGGTCCATGATCACCCTGCTCGCCATCACGGGTCACGGCATCGCCTGGGTCTTCGGCACCCTTCTGTGTCTGACGAGGAGCAACACGTTAGCAGGGCAAGAGGTCTTGGTCAATCTGCTGCTAGGTAAGGACGGTGCTAATGGGGACGCACACAGGTTCGCCTGTAGCTTCTGTGCCTTTTGA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019962 True 549 mRNA 0.59 1 4768115 4768663

Neighbor

gene id symbol gene type direction distance location
AMCG00019963 NA coding upstream 90230 4658354 ~ 4677885 (+)
AMCG00019957 aif1l coding upstream 117549 4631041 ~ 4650566 (+)
AMCG00019958 NA coding upstream 146582 4603295 ~ 4621533 (+)
AMCG00019961 NA coding upstream 180174 4559306 ~ 4587941 (+)
AMCG00019959 lamc3,LOC107718641,LOC107700933,LOC107757520,LOC107596886,LOC107655895 coding upstream 212210 4524356 ~ 4555905 (+)
AMCG00019965 LOC107672533,LOC107731020,LOC107552623,LOC107740807,LOC107587726 coding downstream 26770 4795433 ~ 4795807 (+)
AMCG00019966 uck1,LOC102793675 coding downstream 92432 4861095 ~ 4887003 (+)
AMCG00019969 NA coding downstream 121115 4889778 ~ 4896490 (+)
AMCG00019973 NA coding downstream 220877 4989540 ~ 4992117 (+)
AMCG00019978 slc25a25,LOC106570619 coding downstream 322771 5091434 ~ 5103902 (+)
G59956 NA non-coding upstream 9468 4758285 ~ 4758647 (+)
G59955 NA non-coding upstream 15219 4750465 ~ 4752896 (+)
G59936 NA non-coding upstream 33440 4707564 ~ 4734675 (+)
G59857 LOC100136012 non-coding upstream 728195 4039515 ~ 4039920 (+)
G59849 NA non-coding upstream 816705 3951130 ~ 3951410 (+)
G59959 NA non-coding downstream 27911 4796574 ~ 4800283 (+)
G60038 NA non-coding downstream 223975 4992638 ~ 5028847 (+)
G60072 NA non-coding downstream 405773 5174436 ~ 5175779 (+)
G60201 NA non-coding downstream 927964 5696627 ~ 5696853 (+)
G60202 NA non-coding downstream 931838 5700501 ~ 5700840 (+)
AMCG00019934 NA other upstream 1516708 3241308 ~ 3251407 (+)
AMCG00019920 NA other upstream 1798520 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 3659119 1074816 ~ 1108996 (+)
G59305 NA other upstream 4322585 441598 ~ 445530 (+)
AMCG00019967 prrc2b other downstream 55150 4823813 ~ 4856929 (+)
G60137 NA other downstream 587109 5355772 ~ 5361863 (+)
G60132 NA other downstream 589801 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 1338331 6106994 ~ 6114196 (+)
AMCG00020000 NA other downstream 1414036 6182699 ~ 6187889 (+)

Expression


Co-expression Network